PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179603.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 590aa MW: 67006.1 Da PI: 9.1047

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.2e-19	25	114	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF+ r+++ +k r+g +++++ vC+++g++++ ++ t+ +rr+r+++ + Ckak+++k++++g ++v+ +++ H+H+++ XP_019179603.1 25 FYKQYAGTVGFDYRQHSIRKD-RDGVVVEKHVVCNRQGFKQRVSRVakTTLARRQRVTNMVRCKAKVVIKRKSNGLYVVHYFKERHTHSMC 114 9***********9988887.9999*********9987766558899***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MWVYKAVVKP IVGQQFVSLD GAVVFYKQYA GTVGFDYRQH SIRKDRDGVV VEKHVVCNRQ 60 GFKQRVSRVA KTTLARRQRV TNMVRCKAKV VIKRKSNGLY VVHYFKERHT HSMCSIIARQ 120 FLKVNRSLDA GHQMFIASCV RANIGSVRSY RLFKEIVGEY SSVVATGVDF KNFKRDLMAY 180 ILNGDAQLFI DTLFKRRELC EAFDFEYDVD EGDQLSRVFW ADAVSRKNFA LFGDVVSFDA 240 TYRTNRYKLV FVPFTGIDNH KRSITFGAGL LTREDVDSYV WLLEKFKKTM CHDPICVVTD 300 QDPALKVAVA LVFGTSKHRF CMWHIMCKVG EKVGLILSKD EVFRRKLNGI VWNKSLDSKS 360 FEEAWSCIME EYGLGDNDSM ALEKHAMDVY TISVFYDIQV EICAACYSCQ VVSLCDCDGH 420 MSYGIKDGAQ RAWYVVSRWT KGACLKPIFH IDDTIVDQSS KVENVRIFTN LLWSDIYACV 480 SLANGNIERL AQLRRVICEQ RQLFLQEGSE DGSGVVAGGS KQSVINSFCG DVSQGSTVEV 540 RDPIQAKNKG SGKRLKSKRE KAASKCVKQS RKCHTCDEYG HNSRTCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MWVYKAVVKP IVGQQFVSLD GAVVFYKQYA GTVGFDYRQH SIRKDRDGVV VEKHVVCNRQ  60
GFKQRVSRVA KTTLARRQRV TNMVRCKAKV VIKRKSNGLY VVHYFKERHT HSMCSIIARQ  120
FLKVNRSLDA GHQMFIASCV RANIGSVRSY RLFKEIVGEY SSVVATGVDF KNFKRDLMAY  180
ILNGDAQLFI DTLFKRRELC EAFDFEYDVD EGDQLSRVFW ADAVSRKNFA LFGDVVSFDA  240
TYRTNRYKLV FVPFTGIDNH KRSITFGAGL LTREDVDSYV WLLEKFKKTM CHDPICVVTD  300
QDPALKVAVA LVFGTSKHRF CMWHIMCKVG EKVGLILSKD EVFRRKLNGI VWNKSLDSKS  360
FEEAWSCIME EYGLGDNDSM ALEKHAMDVY TISVFYDIQV EICAACYSCQ VVSLCDCDGH  420
MSYGIKDGAQ RAWYVVSRWT KGACLKPIFH IDDTIVDQSS KVENVRIFTN LLWSDIYACV  480
SLANGNIERL AQLRRVICEQ RQLFLQEGSE DGSGVVAGGS KQSVINSFCG DVSQGSTVEV  540
RDPIQAKNKG SGKRLKSKRE KAASKCVKQS RKCHTCDEYG HNSRTCPLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-57	FAR1 family protein