PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179567.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 754aa MW: 85928.5 Da PI: 8.1268

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.8e-18	68	169	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY +YA vGF+vr + kk r ge++ r++ C++eg+++ + + ++++r+r+++r+gCka+++ k++++ + v ++e XP_019179567.1 68 EFYIKYAALVGFDVRCGSLKKD-RGGEVILRHLLCNREGYKSVSGGTpnagghgvyddsrPVTQKRRRVSNRVGCKARIVFKNDQTRGYWVFSFE 161 6**************99998.8999************99999******998899999**************99999* PP FAR1 83 leHnHela 90 + H+H l+ XP_019179567.1 162 ERHTHVLC 169 ***998 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MWEFQPCVQY AYAFLIARMW VECVFSGVGE GCRLQISPGS SKYWWPQCDD GSKPVIGQTF 60 KTLTEGEEFY IKYAALVGFD VRCGSLKKDR GGEVILRHLL CNREGYKSVS GGTPNAGGHG 120 VYDDSRPVTQ KRRRVSNRVG CKARIVFKND QTRGYWVFSF EERHTHVLCT PLSRQFMKVN 180 RKLDFGHQAF MANCAKANVG TSQGVRLLSE FVGGYENVGA TSVDFQNSKR DLRAYIEGCD 240 AQYLLDKLSR KNEKCAVFYY KHDIDENDQL RRVFWADPVA RRNHTVFGDI VSFDATYSTN 300 RYKMVFVPFT GVDNHKRCVT FGAALITKED VASYVWVLET YKEAMGDAPS CFVTDQDPAM 360 RIALAEVYPT TRHRFCMWHI MMKVGEKVGP ELSKDGVFRG KLNAIVWDEI QQPDVFETRW 420 QALLGEYGLL DHNWFTQLWE ARRYWIPAYF KDMILSGLVR TTSRSEGENS FFGRYLTHTS 480 SLVEFYSHFE SAVDAQRQIH TMLNAVCEGH FAPTQTDLKM ERHALAVYTV TIFREVQAEI 540 YAGCYSCGVV SVDGAGDVIN YGIKESENQQ FQVHYNSSDS SATCTCSLFQ RLGWLCRHIF 600 LVFKNNHVDN IPSRYIVDRW TRKVCLRAEF QYDGLTIQSN VNDDESKTQE NKMWAEIFAC 660 VGLAITSSER VERLTQVIHQ LKDSFVGETN GPVHHTKNNP MIQSYCGSEP VLAVTVKPPN 720 VAKNKGSGKR FKGKREKAIE QSLKGTWNEL GPGT

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MWEFQPCVQY AYAFLIARMW VECVFSGVGE GCRLQISPGS SKYWWPQCDD GSKPVIGQTF  60
KTLTEGEEFY IKYAALVGFD VRCGSLKKDR GGEVILRHLL CNREGYKSVS GGTPNAGGHG  120
VYDDSRPVTQ KRRRVSNRVG CKARIVFKND QTRGYWVFSF EERHTHVLCT PLSRQFMKVN  180
RKLDFGHQAF MANCAKANVG TSQGVRLLSE FVGGYENVGA TSVDFQNSKR DLRAYIEGCD  240
AQYLLDKLSR KNEKCAVFYY KHDIDENDQL RRVFWADPVA RRNHTVFGDI VSFDATYSTN  300
RYKMVFVPFT GVDNHKRCVT FGAALITKED VASYVWVLET YKEAMGDAPS CFVTDQDPAM  360
RIALAEVYPT TRHRFCMWHI MMKVGEKVGP ELSKDGVFRG KLNAIVWDEI QQPDVFETRW  420
QALLGEYGLL DHNWFTQLWE ARRYWIPAYF KDMILSGLVR TTSRSEGENS FFGRYLTHTS  480
SLVEFYSHFE SAVDAQRQIH TMLNAVCEGH FAPTQTDLKM ERHALAVYTV TIFREVQAEI  540
YAGCYSCGVV SVDGAGDVIN YGIKESENQQ FQVHYNSSDS SATCTCSLFQ RLGWLCRHIF  600
LVFKNNHVDN IPSRYIVDRW TRKVCLRAEF QYDGLTIQSN VNDDESKTQE NKMWAEIFAC  660
VGLAITSSER VERLTQVIHQ LKDSFVGETN GPVHHTKNNP MIQSYCGSEP VLAVTVKPPN  720
VAKNKGSGKR FKGKREKAIE QSLKGTWNEL GPGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	135	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-90	FAR1 family protein