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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019179543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 657aa MW: 72921.2 Da PI: 6.1298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 404.9 | 8e-124 | 270 | 642 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 l++lL++c+eav ++++++++++ rl elasp+g p+ Rl+ayfteALa r+a ++++++++ pp++ ++ ++ +al+l+++v+Pi+ XP_019179543.1 270 LITLLVACVEAVGLKNFAAVNHCIGRLGELASPRGLPVSRLTAYFTEALALRVAWHWPHIFHITPPRDLDRPGglddDHNNGTALRLLNQVTPIP 364 5789**************************************************************999876666556777789999******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 kf ++t N+ +l+ ++g++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el etg+rLa fAe+l++ fef++ v++rl XP_019179543.1 365 KFIQFTSNEILLRVFQGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHIRITGIGE----SKQELLETGDRLAGFAEQLNLAFEFHP-VVDRL 454 **********************************************************....9**************************.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ed++l++L+vk+gE++aVn++lq+h++l ++ + ++L l++s++P vv++eqea+h+++s+ r++++l+yysa+fdsl+++lp +s XP_019179543.1 455 EDVRLWMLHVKEGESVAVNCMLQMHKVLYDTSGRAL--VDFLGLIRSTNPIAVVMAEQEAEHDESSLESRLVNSLKYYSAVFDSLDSTLPLDSPV 547 ****************************77766655..89******************************************************* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaG.Fkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaW 373 r+k+E++ ++rei+n++aceg+er erh +++kWr+ l+e G F+ v ++e++ q ++ll++++++ y+ve++ ++ l+l W+d+pL++vSaW XP_019179543.1 548 RTKIEEM-FAREIRNIIACEGRERLERHASFGKWRKLLMEQGkFRCVGITERELLQSQMLLKMHSMESYKVEKQgeDDGLTLSWEDQPLYTVSAW 641 *******.****************************9777666*****************************7666999**************** PP GRAS 374 r 374 + XP_019179543.1 642 T 642 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence |
MLAGCSSSTL VSPRHRLRSE ASEQFQACHF PAIMSTQRLD LPCNFIRKES SRAQSVRPVG 60 LSVEKPGGEA KTSGCGLKQN IRLPPTPTAI QTPRFEGKRE SWEWEKKSRC LKRSCDEGFV 120 SRANKRKKGC GEEEEEDEKE EEEKGHHGLS LGHHSGGFWF QSGVVGGEEE SVCFVPSEVR 180 PWLDSVVTEI TDFSDKNVVE TSQGGGKEAS GSSTSSEGGR GGGRGLLLRP PPTSSDYEIG 240 NGSRRPNPNN TAASQAAVAG ETEPNNGVEL ITLLVACVEA VGLKNFAAVN HCIGRLGELA 300 SPRGLPVSRL TAYFTEALAL RVAWHWPHIF HITPPRDLDR PGGLDDDHNN GTALRLLNQV 360 TPIPKFIQFT SNEILLRVFQ GKDRVHIIDF DIKQGLQWPS LFQSLASRAN PPSHIRITGI 420 GESKQELLET GDRLAGFAEQ LNLAFEFHPV VDRLEDVRLW MLHVKEGESV AVNCMLQMHK 480 VLYDTSGRAL VDFLGLIRST NPIAVVMAEQ EAEHDESSLE SRLVNSLKYY SAVFDSLDST 540 LPLDSPVRTK IEEMFAREIR NIIACEGRER LERHASFGKW RKLLMEQGKF RCVGITEREL 600 LQSQMLLKMH SMESYKVEKQ GEDDGLTLSW EDQPLYTVSA WTPFDIAGSS SSYSQPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |