PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179493.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 666aa MW: 76604.1 Da PI: 8.074

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.6e-21	38	125	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA++vGFsvrk k++++ ++++++++f+Csk g++ + + ++ ++ rtgC a ++ + +g+w +tk e+ HnHel+p XP_019179493.1 38 LYNDYAYRVGFSVRKGKQRYKGSTNTVKMKRFYCSKAGHKVKVNPG--VRSYSKIDLRTGCGAFVQFDVDGNGVWTITKHEKGHNHELCP 125 7******************99999*********9998776..88889999******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MEEATDQTEL NIDGLSSVPV DQDLVGVSVS NVDEAYKLYN DYAYRVGFSV RKGKQRYKGS 60 TNTVKMKRFY CSKAGHKVKV NPGVRSYSKI DLRTGCGAFV QFDVDGNGVW TITKHEKGHN 120 HELCPSDKSH LLRSHRKVGK NQLSYLKDLK RSGVALTDGV RFLTQQSGGS PFVGFTNPDA 180 FNSLSYDSLK SLDGTDSNSL IEIFRRRQCN ESDFFFDFEV DADARLCNFF WRDGQMRRDY 240 ELFGDLVVHD TTYRTNKSNM ICGPFVGMNH HCMNVMFGCG FLMNERIESF VWLFRAFLRS 300 MGGKYPQSIM TDQCATMAAA ISQVFPTSRH RLCIWHISEN SKKHIKTLRN NKDFLDLFNC 360 LLKYTDTEAE FEFYWTRMVT EHKCHKNVWL EKLYDCREKW CPAFSKDYFS GGILSSQRSE 420 TTNHSISRRL SKTVGLCDFY SSFISIVSEW RSKENGEDFR CAQGVPNMVT EHVKLLSHAR 480 EVYTIEIYFL FEEQFLKGTA CHQECVLNDG YQYKYHVWRP DIDVIRHEVS FKSTDLDICC 540 SCKLFSEVGI LCCHCLRILN VHCVSTIPDK YILKRWTKKV IEGRTVNIAS LSYNVGVASS 600 IWVVEMIKKF QRLIVASQDN VVARQICEEA FENAKKRIEA EVGHVHIEEF NVSSSSGIVQ 660 NPSSQR

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MEEATDQTEL NIDGLSSVPV DQDLVGVSVS NVDEAYKLYN DYAYRVGFSV RKGKQRYKGS  60
TNTVKMKRFY CSKAGHKVKV NPGVRSYSKI DLRTGCGAFV QFDVDGNGVW TITKHEKGHN  120
HELCPSDKSH LLRSHRKVGK NQLSYLKDLK RSGVALTDGV RFLTQQSGGS PFVGFTNPDA  180
FNSLSYDSLK SLDGTDSNSL IEIFRRRQCN ESDFFFDFEV DADARLCNFF WRDGQMRRDY  240
ELFGDLVVHD TTYRTNKSNM ICGPFVGMNH HCMNVMFGCG FLMNERIESF VWLFRAFLRS  300
MGGKYPQSIM TDQCATMAAA ISQVFPTSRH RLCIWHISEN SKKHIKTLRN NKDFLDLFNC  360
LLKYTDTEAE FEFYWTRMVT EHKCHKNVWL EKLYDCREKW CPAFSKDYFS GGILSSQRSE  420
TTNHSISRRL SKTVGLCDFY SSFISIVSEW RSKENGEDFR CAQGVPNMVT EHVKLLSHAR  480
EVYTIEIYFL FEEQFLKGTA CHQECVLNDG YQYKYHVWRP DIDVIRHEVS FKSTDLDICC  540
SCKLFSEVGI LCCHCLRILN VHCVSTIPDK YILKRWTKKV IEGRTVNIAS LSYNVGVASS  600
IWVVEMIKKF QRLIVASQDN VVARQICEEA FENAKKRIEA EVGHVHIEEF NVSSSSGIVQ  660
NPSSQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-85	FAR1 family protein