PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179464.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 697aa MW: 80028.4 Da PI: 8.0593

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	80	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + gk+ + +++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHel XP_019179464.1 80 EFYSEFAKRCGFSIRRHRTEGKeGVGKGLTRRYFVCHRAGKTPVKPANENKPQRNRKSSRCGCQAYMRISKNSdlgLPEWRVTGFVNHHNHELL 173 6************9998876356667999*************99******************9765579***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MCRLIFKVSI QQGVERDTMS GEAGNMMLVY GDPSDQRSFS LDDTSSTEES PEQTRLSLET 60 TNESIPYMGQ RFPTHDAAYE FYSEFAKRCG FSIRRHRTEG KEGVGKGLTR RYFVCHRAGK 120 TPVKPANENK PQRNRKSSRC GCQAYMRISK NSDLGLPEWR VTGFVNHHNH ELLEPNQVRF 180 LPAYRTICDA DKSRILMFAK TGISVQQMMR LLELEKCVEP GYLPFTEKDV RNLLQSFRKV 240 DPEDESIDLL RMCRNIKERD PNFKYDFTLD CNNRLENIAW SYASSIQSYE IFGDAVVFDT 300 THCLTAFDMP MGIWVGVNNY GMPCFFGCVL LREENVRSFS WALKAFLGFM NGKAPQTVLT 360 DQNMCLKEAI AVEMPTTKHA LCIWLIVAKF PSWFNAVLGE RYNEWKAEFY RLYNLESIDD 420 FELGWRDMVN LFGLHNNRHI ASLLSLRSLW ALPYLRSHFF AGMVTAGHSK SINAFIQRFL 480 SAQTRLAHFV EQVAVAVDFK DQTGEQQTMQ QNLQNICLKT GAPMESHAAT VLTPFAFSKL 540 QEQLVLAAHY ASFQLEDGFL VRHHTKAEGG RKVYWVPREG IIGCSCQLFE FSGILCRHAL 600 RVLSTGNCFQ IPERYLPLRW RRISLPSSKA PQTNQNDHTE RVQSLQSLVS NLVTESAKSK 660 ERLDFASEQI SILLTQIREQ PVYSQEVREL SSIQRNL

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MCRLIFKVSI QQGVERDTMS GEAGNMMLVY GDPSDQRSFS LDDTSSTEES PEQTRLSLET  60
TNESIPYMGQ RFPTHDAAYE FYSEFAKRCG FSIRRHRTEG KEGVGKGLTR RYFVCHRAGK  120
TPVKPANENK PQRNRKSSRC GCQAYMRISK NSDLGLPEWR VTGFVNHHNH ELLEPNQVRF  180
LPAYRTICDA DKSRILMFAK TGISVQQMMR LLELEKCVEP GYLPFTEKDV RNLLQSFRKV  240
DPEDESIDLL RMCRNIKERD PNFKYDFTLD CNNRLENIAW SYASSIQSYE IFGDAVVFDT  300
THCLTAFDMP MGIWVGVNNY GMPCFFGCVL LREENVRSFS WALKAFLGFM NGKAPQTVLT  360
DQNMCLKEAI AVEMPTTKHA LCIWLIVAKF PSWFNAVLGE RYNEWKAEFY RLYNLESIDD  420
FELGWRDMVN LFGLHNNRHI ASLLSLRSLW ALPYLRSHFF AGMVTAGHSK SINAFIQRFL  480
SAQTRLAHFV EQVAVAVDFK DQTGEQQTMQ QNLQNICLKT GAPMESHAAT VLTPFAFSKL  540
QEQLVLAAHY ASFQLEDGFL VRHHTKAEGG RKVYWVPREG IIGCSCQLFE FSGILCRHAL  600
RVLSTGNCFQ IPERYLPLRW RRISLPSSKA PQTNQNDHTE RVQSLQSLVS NLVTESAKSK  660
ERLDFASEQI SILLTQIREQ PVYSQEVREL SSIQRNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein