PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179351.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 601aa MW: 65250.3 Da PI: 8.5382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.8	2.9e-16	372	419	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_019179351.1 372 QVHNLSERRRRDRINEKMRALQELIPNC-----NKTDKASMLDEAIEYLKTLQ 419 57***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MQGQSSRGKR NPTSNNLSSE MPVIRDKPKE NPSSRGIRGK AFLMDEMALS VPTNEMDLSQ 60 DDEIVPWLNY SLNNNSLQYE YSSGVVPEAS GLSANELPAQ NNFVSMDKTD GSNLMAVNNS 120 SPRNDNRFGL FPSWSYKAHH PSVPSLGSDI GISNASNNQD SILRDSVDTK MQKQESSILG 180 RGPPGLLNFS HFSRPVSHAR ANTGNIAASP AIENKEKELS ANWRNPVNPA PAQTCSTSKR 240 EMDRHNQPDL QCFKIDHRPV IAKTHDTSLS EDMKKNNNNN NNNQYGQPID PVVNKGVLGG 300 DKAVEPGAVC SSVCSGSSPE RTSNDQSYTL KRKYCDLESG SQSEDIEEES LDVRTEAPVR 360 GGTGSKRSRA AQVHNLSERR RRDRINEKMR ALQELIPNCN KTDKASMLDE AIEYLKTLQF 420 QLQIMSMGAG FCVPPIIYPA GMHATQMPYF PPMGLGMGMG MGMGVGMGMG FGMGIHEMNG 480 RSPGYPLFPI SPMQRVQLSS LPFSGPSTFP GIAASNFPVF GHPGLGIPIS IPKAPTISKS 540 GQPARSSAVG MGASRMGIQV EVPCTSATLK PEDLVKTKSS QLMNNTDPNR SINQTSSQRK 600 A

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MQGQSSRGKR NPTSNNLSSE MPVIRDKPKE NPSSRGIRGK AFLMDEMALS VPTNEMDLSQ  60
DDEIVPWLNY SLNNNSLQYE YSSGVVPEAS GLSANELPAQ NNFVSMDKTD GSNLMAVNNS  120
SPRNDNRFGL FPSWSYKAHH PSVPSLGSDI GISNASNNQD SILRDSVDTK MQKQESSILG  180
RGPPGLLNFS HFSRPVSHAR ANTGNIAASP AIENKEKELS ANWRNPVNPA PAQTCSTSKR  240
EMDRHNQPDL QCFKIDHRPV IAKTHDTSLS EDMKKNNNNN NNNQYGQPID PVVNKGVLGG  300
DKAVEPGAVC SSVCSGSSPE RTSNDQSYTL KRKYCDLESG SQSEDIEEES LDVRTEAPVR  360
GGTGSKRSRA AQVHNLSERR RRDRINEKMR ALQELIPNCN KTDKASMLDE AIEYLKTLQF  420
QLQIMSMGAG FCVPPIIYPA GMHATQMPYF PPMGLGMGMG MGMGVGMGMG FGMGIHEMNG  480
RSPGYPLFPI SPMQRVQLSS LPFSGPSTFP GIAASNFPVF GHPGLGIPIS IPKAPTISKS  540
GQPARSSAVG MGASRMGIQV EVPCTSATLK PEDLVKTKSS QLMNNTDPNR SINQTSSQRK  600
A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	383	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-45	bHLH family protein