PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179244.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 501aa MW: 57195.4 Da PI: 6.6836

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	7.7e-13	124	196	2	65
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkak 65 fY++YA+ vGF+vr+++ +k ++g ++k+ +vCs+eg++++ + + ++r+r+++r+gCka+ XP_019179244.1 124 FYRQYASVVGFDVRRNSVRKD-MDGVVVKNLLVCSREGFKQSADVLvvgdadsgeaRLAQKRRRVSNRVGCKAS 196 9*************99997.9999************99889*99988889999*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MVKRVQCDPV CGLCGIAYES ILHVFANCAF AHKCWTVLND QWRLGHVESI DEWLEEMWVF 60 PGMFTQYASM GVFIVQTVVR SGSLQACVMD VSPDRTKFWN PSCDEAIRPF EGQVFPSLGH 120 VIAFYRQYAS VVGFDVRRNS VRKDMDGVVV KNLLVCSREG FKQSADVLVV GDADSGEARL 180 AQKRRRVSNR VGCKASSDAN VVVNKYVKKV DACPDYFFEY DLDSEDQLRR LFLVDPFVKH 240 NFAAFGDVVS YGMVFVPFTG VDNHKKGNEM LSVEKFEHGW LEVMEKYNLV EHRWFRLMYD 300 LRSFWIPVFF NDVFMGGLMR TTSRSEAANS VFSSFTNHHA SLSELFNNLE GAIDAQRQAR 360 AKLNANCEGN FPLCKTSLLI ERHAAAVYTI NVFYDMQAEV VASSFSCRLV SSNVDGMVTR 420 FEVKDDDDLV HMVMFDCSIT SVEYTCNLFT RRGLLCRHIF WVFKDRRVDS IPSRYVVARW 480 TRDACVRQLL GVQRGEAVDG E

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MVKRVQCDPV CGLCGIAYES ILHVFANCAF AHKCWTVLND QWRLGHVESI DEWLEEMWVF  60
PGMFTQYASM GVFIVQTVVR SGSLQACVMD VSPDRTKFWN PSCDEAIRPF EGQVFPSLGH  120
VIAFYRQYAS VVGFDVRRNS VRKDMDGVVV KNLLVCSREG FKQSADVLVV GDADSGEARL  180
AQKRRRVSNR VGCKASSDAN VVVNKYVKKV DACPDYFFEY DLDSEDQLRR LFLVDPFVKH  240
NFAAFGDVVS YGMVFVPFTG VDNHKKGNEM LSVEKFEHGW LEVMEKYNLV EHRWFRLMYD  300
LRSFWIPVFF NDVFMGGLMR TTSRSEAANS VFSSFTNHHA SLSELFNNLE GAIDAQRQAR  360
AKLNANCEGN FPLCKTSLLI ERHAAAVYTI NVFYDMQAEV VASSFSCRLV SSNVDGMVTR  420
FEVKDDDDLV HMVMFDCSIT SVEYTCNLFT RRGLLCRHIF WVFKDRRVDS IPSRYVVARW  480
TRDACVRQLL GVQRGEAVDG E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	187	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-32	FAR1 family protein