PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179239.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 310aa    MW: 34473.3 Da    PI: 4.5461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  +   G  +W+++++  g++R++k+c++rw +yl
   XP_019179239.1 14 KGPWTAEEDKKLISFIITNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.16.2e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +  E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++
   XP_019179239.1  71 SDAEEQLVIDLHAHLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111
                      778***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAE EDKKLISFII TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEQLVID LHAHLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHEPLN KEEITKPTSD DQSSTTTTSH AATTLPELDQ NNGQQQVQVV PQSTTTQVPT  180
EATSEEQSSS CSPTENSSSS TATTDESQAV VVLDAMCGGD DDPLLSSLLE NHAPMPDAAQ  240
WDLPLPSDHQ PPLIFDDNDD LEIPTLLDDN FGWLFNCQQD FGIQDFGFDC LNDPEMHIFD  300
TVDSGNNHNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.17e-87MYB family protein