PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179178.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 542aa MW: 61571.5 Da PI: 8.5745

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.1	2.2e-21	30	117	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019179178.1 30 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 117 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MVIICKLNVV IVDEDLVGVV VRNVDEAFEL YNGYAYRVGF SVRKGQQRYK ASTKSIQMKR 60 FFCAKAGYKQ KPNSGVKLYS KIDMRTGCGA FVQFDVGGDG MWTVTKHLKE HNHELCSFGK 120 SHLLRSHRRV GNNQLEYLKD MKSSGVALAD GMRFLKHQSG GSPLVGFTNR DAYNSMASVS 180 LKCLDGSDSN SLVEIFRRRQ SNEADFFFDF ETIMTDQCSA MAAGISMVFP TSRHRLCIWH 240 IGENSKKHIK ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC 300 REKWCPAFNK DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG 360 EDFRCSQGVP AMMLDHVKLL SHARECKYHV WRPDIDIIRH EVTFKAINLD ICCSCKLFSE 420 LGILCCHCLR ILHVHCVSSI PDKYILKRWT KKAVERTNVD IASVFYNGGV PSSIWAVEIS 480 RKFQRLIVSS QDNSVARQLC DEAVENARKN IEAEIGDVNT EEGAVSSSSG IVQDPQAGGV 540 KV

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MVIICKLNVV IVDEDLVGVV VRNVDEAFEL YNGYAYRVGF SVRKGQQRYK ASTKSIQMKR  60
FFCAKAGYKQ KPNSGVKLYS KIDMRTGCGA FVQFDVGGDG MWTVTKHLKE HNHELCSFGK  120
SHLLRSHRRV GNNQLEYLKD MKSSGVALAD GMRFLKHQSG GSPLVGFTNR DAYNSMASVS  180
LKCLDGSDSN SLVEIFRRRQ SNEADFFFDF ETIMTDQCSA MAAGISMVFP TSRHRLCIWH  240
IGENSKKHIK ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC  300
REKWCPAFNK DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG  360
EDFRCSQGVP AMMLDHVKLL SHARECKYHV WRPDIDIIRH EVTFKAINLD ICCSCKLFSE  420
LGILCCHCLR ILHVHCVSSI PDKYILKRWT KKAVERTNVD IASVFYNGGV PSSIWAVEIS  480
RKFQRLIVSS QDNSVARQLC DEAVENARKN IEAEIGDVNT EEGAVSSSSG IVQDPQAGGV  540
KV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-33	FAR1 family protein