PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179036.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 262aa    MW: 30443.5 Da    PI: 9.5509
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.2e-2135127190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YA  vGF+vr+s  +k+ + g++ ++ +vCs+eg+++    +    +e+ +r+r+++r+gC a++k +   +g +evt++e+ H+H l+
  XP_019179036.1  35 EFYKKYAALVGFDVRRSGDRKN-KVGKVLHKYLVCSREGFKQVAYLEkretSETVKRRRPSNRVGCGAHIKFNTIGNGGYEVTSFEERHTHRLC 127
                     6*****************9999.5666**************96554444457888999***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MEISPGNTTY WVPKYDAKMK LTVGQQFKRL EDGIEFYKKY AALVGFDVRR SGDRKNKVGK  60
VLHKYLVCSR EGFKQVAYLE KRETSETVKR RRPSNRVGCG AHIKFNTIGN GGYEVTSFEE  120
RHTHRLCEEQ SKPFMKVNRK LDMGHKDFIE KCGKVNIGAS KSFNLYGEMV GGVEHVGATS  180
TDFKNHRRKI LAYMKERDAQ ELVAKCQERK EYWPDYYFEY AVDDQQQLSR IFWADEHGRK  240
SFAHFGDAMA FDATYKTNSC ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1 family protein