PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179032.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 687aa MW: 77792.7 Da PI: 7.6617

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	64	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019179032.1 64 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 148 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDQVDVDVDG SSSIPVDQDL VGLVVSNADE 60 AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC 120 GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLRSHR SVGDNQLLYL QGLKDSGVAL 180 ADGIRFLKHQ SGGSPLVGFT SRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF 240 DFELDLDARL CIFFWRDGQM RRDYEVFGDL LVHDTTYRTN KYDMICAPFV GMNHHCMNVM 300 FGCGFLMNER IESFVWLFKV FSRSMGGKSP QTIMTDQCAA MAAAISKVFP TSRHRLCIWH 360 IGENSKKHIK TLRSNKDFLD MFNYVLKYTE TEAEFQFYWT RLVTDYKCHK NTWLEKLYDC 420 REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG 480 EDFRCAQGVP AMMMEHVKLL SHAREVYTIE IYFLFEEQFM KGSACHQEMV LNDGRQQKYH 540 VWRPDIDIIR KFQRLVVSSQ DSSVARKLCD EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG 600 VQNPSSRRLK GERNKRRSGV IEKKYSLARG RRSAANKAAL STKGAVQSLV LENISKLAGD 660 GYLVHPSSSS SDFVQFSKGL DDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDQVDVDVDG SSSIPVDQDL VGLVVSNADE  60
AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC  120
GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLRSHR SVGDNQLLYL QGLKDSGVAL  180
ADGIRFLKHQ SGGSPLVGFT SRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF  240
DFELDLDARL CIFFWRDGQM RRDYEVFGDL LVHDTTYRTN KYDMICAPFV GMNHHCMNVM  300
FGCGFLMNER IESFVWLFKV FSRSMGGKSP QTIMTDQCAA MAAAISKVFP TSRHRLCIWH  360
IGENSKKHIK TLRSNKDFLD MFNYVLKYTE TEAEFQFYWT RLVTDYKCHK NTWLEKLYDC  420
REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG  480
EDFRCAQGVP AMMMEHVKLL SHAREVYTIE IYFLFEEQFM KGSACHQEMV LNDGRQQKYH  540
VWRPDIDIIR KFQRLVVSSQ DSSVARKLCD EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG  600
VQNPSSRRLK GERNKRRSGV IEKKYSLARG RRSAANKAAL STKGAVQSLV LENISKLAGD  660
GYLVHPSSSS SDFVQFSKGL DDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1 family protein