PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178964.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 859aa    MW: 94243.1 Da    PI: 6.0324
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-183088357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019178964.1 30 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 88
                    6789*****************************************************97 PP
2START169.52.2e-531783852204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a ra+g+v  +++  v+e+l+d++ W ++++  ++l v+ +g  g+++l+
  XP_019178964.1 178 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAGRACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLSVLPTGngGTIELI 271
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s++  p+     s+vRae+lpSg+li+p+++g+s +++v+hvdl+++ ++++lr+l+
  XP_019178964.1 272 YMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLSSKTGGPSgppATSFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWNVPEVLRPLY 366
                     *****************************************99999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k+++a+l++ +
  XP_019178964.1 367 ESSKILVQKMTMAALRHIR 385
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    
MGVYDKEESS NSGGSNSSGK HQQHQMDSSK YVRYTPEQVE ALERVYSECP KPSSLRRQQL  60
IRECPILSNI EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV  120
SQLVYENGYM RTQLHTVNTT TTDTSCESVV VSGQQQQQNP TPQHPQRDAN NPAGLLAIAE  180
ETLAEFLGKA TGTAVDWVQM IGMKPGPDSI GIVAVSRNCS GVAGRACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCLDVLSVL PTGNGGTIEL IYMQTYAPTT LASARDFWTL RYTTSLEDGS  300
LVICERSLSS KTGGPSGPPA TSFVRAEMLP SGYLIRPCEG GGSIIHIVDH VDLDAWNVPE  360
VLRPLYESSK ILVQKMTMAA LRHIRQIAQE TSGEIQYSGG RQPAVLRALS QRLCRGFNDA  420
VNGFVDDGWT VLGSDGVEDV TIAINSSPSK FLGSQYNNLS MLPTFGGVLC ARASMLLQNV  480
PPALLVRFLR EHRSEWADYG VDAYSAASLK ASPYAVPCAR PGGFPSSQVI LPLAQTVEHE  540
EFLEVVRLEG HAFSPEDIAL SRDMYLLQLC SGIDENAAGA CAQLVFAPID ESFGDDAPLL  600
PSGFRVIPVE PKSDAPGTTR TLDLASTLEA GNGGSTRPAG GEVESNNYNL RSVLTIAFQF  660
TFENHYRDNV AAMARQYVRS IVSSVQRVAM AIAPSQLSSN LTPRPLPGSP EAITLARWIC  720
RSYRMHTGSE LLQLESQAGD AVLKQLWHHS DAIMCCSVKM NASAVFTFAN QAGLDLLETT  780
LLALQDIMLD KILDEAGRKV LVSEFSKIMQ QGFAYLPAGI CVSSMGRPVS YEQAVAWKVL  840
NDDDTNHCLA FMFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein