PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178877.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 734aa MW: 83715 Da PI: 6.9098

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	9.9e-20	71	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ + + + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019178877.1 71 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 157 7*************************************998877..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MDDAVDQRDE ALDQRDEAGD ELHTVPISED VVVDSPSSDP IELDIDGFSS NPVDEDLVGV 60 VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY 120 SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK 180 DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDS NSLIEIFRNR 240 QSTESDFFFD FEVDCDSRLC SFFWRDGRMR QDYELFGDLL VHDTTYRTNK YDMICGPFVE 300 MNHHCMNVMF GCGFLMNERI ESFVWLFRAF LRSMNGKCPQ TIMTDQCASM AAAICQVFPT 360 SRHRLCIWHI GENSKKHIKA LRNNKDFLDM FNCVLKYTET EAEFEFYWTR LVTDYKCHKN 420 SWIQKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRLSKTAGLC DFYSSFVSVT 480 SEWRSKENGE DFRCTQGVPN MMMEHVKLLL HAREVYTIEI YFLFEEQFMK GNACHQEMVL 540 NEGCQFKYHV WRPDIDIIRH EVSFKLSTLD ISCSCKLISE LGILCCHCLR ILHIHCVSSI 600 PNKYIMKRWT KKVADGRDVN TGSMFCRAGV PPSIWVVEIC RKFQRLISSS QDNSVTRQFC 660 DEAVEEAKKK KYSAARGRRS AANKVASSTK GAVQSLVLES LSEIAGDGYL VHPSSGSSEF 720 CQYSNDVDDN AVVD

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MDDAVDQRDE ALDQRDEAGD ELHTVPISED VVVDSPSSDP IELDIDGFSS NPVDEDLVGV  60
VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY  120
SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK  180
DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDS NSLIEIFRNR  240
QSTESDFFFD FEVDCDSRLC SFFWRDGRMR QDYELFGDLL VHDTTYRTNK YDMICGPFVE  300
MNHHCMNVMF GCGFLMNERI ESFVWLFRAF LRSMNGKCPQ TIMTDQCASM AAAICQVFPT  360
SRHRLCIWHI GENSKKHIKA LRNNKDFLDM FNCVLKYTET EAEFEFYWTR LVTDYKCHKN  420
SWIQKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRLSKTAGLC DFYSSFVSVT  480
SEWRSKENGE DFRCTQGVPN MMMEHVKLLL HAREVYTIEI YFLFEEQFMK GNACHQEMVL  540
NEGCQFKYHV WRPDIDIIRH EVSFKLSTLD ISCSCKLISE LGILCCHCLR ILHIHCVSSI  600
PNKYIMKRWT KKVADGRDVN TGSMFCRAGV PPSIWVVEIC RKFQRLISSS QDNSVTRQFC  660
DEAVEEAKKK KYSAARGRRS AANKVASSTK GAVQSLVLES LSEIAGDGYL VHPSSGSSEF  720
CQYSNDVDDN AVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-79	FAR1 family protein