PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178867.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 681aa MW: 77374.6 Da PI: 8.4237

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.8	2.3e-15	35	132	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA +vGF+v + + +k+ ge+ ++ + Cs+ g++++ k+ + +++ +r+++r+gC+ak+ +++ dg++ + le+ H XP_019178867.1 35 EFYIRYACTVGFNVHRGTDSKN-SCGEVLRKYLLCSRGGFKQPAKELcpggdvvnspSISKKGRRVTNRVGCNAKIIFRLKGDGNYFLFYLEERH 128 6**************99998.7888************9999***9998889999*************************** PP FAR1 86 nHel 89 +H l XP_019178867.1 129 THCL 132 88 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MDISPWKMKY WVPVCDNAIK PFVGQWFSRL DDGIEFYIRY ACTVGFNVHR GTDSKNSCGE 60 VLRKYLLCSR GGFKQPAKEL CPGGDVVNSP SISKKGRRVT NRVGCNAKII FRLKGDGNYF 120 LFYLEERHTH CLYTEASKPF MRVNRKLDLG HQIFVANCAK ANIGPIKSWK LYRQIVGDYT 180 DVGATSVDFQ NFKRDLMAYI SGGDAQLIVE KFLHKKELCS SFFFDYVGPK RDYDVDEYDQ 240 FLRVFWVDPV ARRNFACFGD VVSFDATYRT NWYKLVFVPF TGIDNHKKSV TFAAGLIAKE 300 DVGSYVWLLD NFKRAIGHEP TYIITDQDPA MRGAVPTVFN SSHHRFCMWH IMTKFGDKVG 360 PVLAKDQSFR RALNDVVWDE SITIEEFESK WLGVMEVYDL SEYRWFRQMF DLRAFWISTF 420 FRDLPMGGLL RTPSRSESQN TSFGGCTNCH ASLVEFVIHF EGAIDSQRHK QAKLNAACEG 480 HLPVVKTPLA IEQYAAATEI VAGCFDCSVL SSIVDGVLKR VGVEDAYGNV YVVVYNPTET 540 TADCFYRMFQ HVGLLCRHIF LVFKDARLDS IPPCYLVSRW THEAYKRQIY DIEGVHDDVV 600 VGVANSRELK LSFVNADTSI GTSICKSSVV RAFGGMITSP DILVHPPTVA KNKGSGKRYK 660 STKDLAAERA AKSTRECKSC Y

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MDISPWKMKY WVPVCDNAIK PFVGQWFSRL DDGIEFYIRY ACTVGFNVHR GTDSKNSCGE  60
VLRKYLLCSR GGFKQPAKEL CPGGDVVNSP SISKKGRRVT NRVGCNAKII FRLKGDGNYF  120
LFYLEERHTH CLYTEASKPF MRVNRKLDLG HQIFVANCAK ANIGPIKSWK LYRQIVGDYT  180
DVGATSVDFQ NFKRDLMAYI SGGDAQLIVE KFLHKKELCS SFFFDYVGPK RDYDVDEYDQ  240
FLRVFWVDPV ARRNFACFGD VVSFDATYRT NWYKLVFVPF TGIDNHKKSV TFAAGLIAKE  300
DVGSYVWLLD NFKRAIGHEP TYIITDQDPA MRGAVPTVFN SSHHRFCMWH IMTKFGDKVG  360
PVLAKDQSFR RALNDVVWDE SITIEEFESK WLGVMEVYDL SEYRWFRQMF DLRAFWISTF  420
FRDLPMGGLL RTPSRSESQN TSFGGCTNCH ASLVEFVIHF EGAIDSQRHK QAKLNAACEG  480
HLPVVKTPLA IEQYAAATEI VAGCFDCSVL SSIVDGVLKR VGVEDAYGNV YVVVYNPTET  540
TADCFYRMFQ HVGLLCRHIF LVFKDARLDS IPPCYLVSRW THEAYKRQIY DIEGVHDDVV  600
VGVANSRELK LSFVNADTSI GTSICKSSVV RAFGGMITSP DILVHPPTVA KNKGSGKRYK  660
STKDLAAERA AKSTRECKSC Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-80	FAR1 family protein