PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178778.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 299aa    MW: 33339.5 Da    PI: 8.2607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-092874145
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     r +WT+ E + + +a +++ ++   +W+++a++++ g+t  +++  + 
   XP_019178778.1 28 RTKWTPAENKAFEKALALYDKDtpdRWERVAEMVP-GKTVVDVIRQYK 74
                     789********************************.******998886 PP
2Myb_DNA-binding461.2e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qk+
   XP_019178778.1 136 PWTEEEHKLFLMGLKKHGKGDWRNISRNFVITRTPTQVASHAQKF 180
                      8*****************************99***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MKWEMGILSP DSSYLSSSSW FHEGSCSRTK WTPAENKAFE KALALYDKDT PDRWERVAEM  60
VPGKTVVDVI RQYKELEDDV TSIEAGLMDL IPIPDYTSSS PFTLEWGGAH RPAFVAGGKR  120
PPANRAPEHE RKKGVPWTEE EHKLFLMGLK KHGKGDWRNI SRNFVITRTP TQVASHAQKF  180
FIRQNSGGKD KRRASIHDIT TVNVDEHLMG SPDTKKRCDD SPDQAGGALS QPQQPPDSGV  240
HKRPFSWNHQ GNVGMAISGL PAGNLFAYAF GPQTMHESIF GSQTMAFPIQ SAAQQYPFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.19e-93MYB_related family protein