PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178756.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 299aa    MW: 34390.7 Da    PI: 5.9707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix621.4e-1934116286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt qe+  Li+a++e++ +l+rg+lk+ +Weev++++        +++s++qC++k+e+l+kry++++           +++++fd ++
  XP_019178756.1  34 WTPQETVNLIQAYKEKWYSLNRGQLKASQWEEVAIAVaarcGFDDLSKSSTQCRHKIEKLRKRYRAERLKPYP------NSWQFFDLMD 116
                     ***********************************996333334569******************98766654......3488888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MATASSPPPD SDHSLHSSPE TLTSLPKKPH PLPWTPQETV NLIQAYKEKW YSLNRGQLKA  60
SQWEEVAIAV AARCGFDDLS KSSTQCRHKI EKLRKRYRAE RLKPYPNSWQ FFDLMDNLER  120
GPLPIAAHPV AMVKYQNPNY DANRYEEDSD NEAANAAGYG SVDLKKNKSK SINHIVSGEM  180
NGTRNMNKRR IPMHEFRKGN FANEPSDDEG EDEEVDEDGI EVEEEDGGDG DSELAAEIRG  240
FAERFMRMEK RKIEMMRDTG RFRIEMQKKM LDMILETQRK IADSVTRILE PNKRVKMEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.17e-31Trihelix family protein