PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178708.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 700aa MW: 77020.9 Da PI: 9.5876

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	601	650	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_019178708.1 601 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 650 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MVLQKRLDYG FNGYRVPPMP RSTRSARKRG VNWRRVEGSP MCSFDLLATV AGKLLLEGES 60 SCSLEKDSVD REKGNEDRTM QEKPGNNQGS CERNFFLSKL VSQAPVFSNF SYDSLSPKSV 120 ITTSDSSDKF APVEQLVNAG SKLEPGSVDR KGDAGVSGCK VFSSCKLGTG VAKPRKHEVK 180 VSSDTKVWDR KPCSTFVCSD NSVKMLTLSK DHIPCGSFPA SRGNVKLGNR DDDENSSVCT 240 QPSTANKAFE PALPRIGDQR IGKLLASEYC EVNPKSNYEE HRNAGEVLAT KPALGNKKNN 300 LKSERSLRDY PFKKRKLYDC SSVSNSNSDR AISNDGNCSS HTKGYNGDAS NYTPPTGSAQ 360 KTAGTSTSAA GGCAFFRTGD SQVKLRIKSF RVPELFVEIP ETSTVGSLKR TVMEAVTTIL 420 GGGLHVGVLF QGKKIRDDDK TLLQTGISRD DKPDTLGFSL EPIPPKASSL EPIPHKASSL 480 EPIPHKASPP PFPEERPYLL SCDTPQPLRR YTPSPRSMVH DVVQQRPADT LRDSSPGTNL 540 INFIESDHDS APSPPDTSLD KSAAEDSRAL VPVPAVNMAE PHDVVPVRKP KRSEAAQRRI 600 RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ 660 RRGEPVPQEL LDRVLIAHAY WSQQQAKQQM KQQAETCLLL

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MVLQKRLDYG FNGYRVPPMP RSTRSARKRG VNWRRVEGSP MCSFDLLATV AGKLLLEGES  60
SCSLEKDSVD REKGNEDRTM QEKPGNNQGS CERNFFLSKL VSQAPVFSNF SYDSLSPKSV  120
ITTSDSSDKF APVEQLVNAG SKLEPGSVDR KGDAGVSGCK VFSSCKLGTG VAKPRKHEVK  180
VSSDTKVWDR KPCSTFVCSD NSVKMLTLSK DHIPCGSFPA SRGNVKLGNR DDDENSSVCT  240
QPSTANKAFE PALPRIGDQR IGKLLASEYC EVNPKSNYEE HRNAGEVLAT KPALGNKKNN  300
LKSERSLRDY PFKKRKLYDC SSVSNSNSDR AISNDGNCSS HTKGYNGDAS NYTPPTGSAQ  360
KTAGTSTSAA GGCAFFRTGD SQVKLRIKSF RVPELFVEIP ETSTVGSLKR TVMEAVTTIL  420
GGGLHVGVLF QGKKIRDDDK TLLQTGISRD DKPDTLGFSL EPIPPKASSL EPIPHKASSL  480
EPIPHKASPP PFPEERPYLL SCDTPQPLRR YTPSPRSMVH DVVQQRPADT LRDSSPGTNL  540
INFIESDHDS APSPPDTSLD KSAAEDSRAL VPVPAVNMAE PHDVVPVRKP KRSEAAQRRI  600
RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ  660
RRGEPVPQEL LDRVLIAHAY WSQQQAKQQM KQQAETCLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	316	LRDYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-137	MYB_related family protein