PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178622.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 560aa MW: 60886.6 Da PI: 5.9373

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.8	2.2e-33	221	278	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ d++++ei+Y+g Hnh+k XP_019178622.1 221 DDGYNWRKYGQKQVKGSENPRSYYKCTHPNCPTKKKVERAL-DGQITEIVYKGAHNHPK 278 8**************************************.*************85 PP
2	WRKY	105.1	3.8e-33	397	455	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+ XP_019178622.1 397 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCPVRKHVERASHDIRSVITTYEGKHNHD 455 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MAASSGTVDA STVSSSFSFS TAPSSFMSTS FTDLLASDDY PSTAAGASAS RGLADRIAER 60 TGSGVPKFKS LPPPSLPLSP PSVSPSSYFA FPPGLSPSEL LDSPVLLSSS NILPSPTTGT 120 FPALNFNWKN DSNTTQEDVK QEDKGYPDFS FQTNSVSMTL NYEDSKRKDG LSSEKTVSEF 180 NSLQQSLPPV TTSTQMSSQN YSEYNQCCPP SQTLREQRRS DDGYNWRKYG QKQVKGSENP 240 RSYYKCTHPN CPTKKKVERA LDGQITEIVY KGAHNHPKPQ STRRSSSSTA SSASTLAAQS 300 YNAPASEVPD QSYWSNGNGQ MDSVATPENS SISIGDDEFE QSSQKRESGG GDEFDEDEPD 360 AKRWKVENES EGVSAPGSRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY 420 YKCTSQGCPV RKHVERASHD IRSVITTYEG KHNHDVPAAR GSGGHALNRG ANPNNNAAMA 480 MAIRPSTMSL QSNYPIPIPS TRPIPGEGQA PYEMLQGPGS FGYSGFGNPM NGYANQIQDN 540 AFSRAKEEPR DDLFLETLLA

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MAASSGTVDA STVSSSFSFS TAPSSFMSTS FTDLLASDDY PSTAAGASAS RGLADRIAER  60
TGSGVPKFKS LPPPSLPLSP PSVSPSSYFA FPPGLSPSEL LDSPVLLSSS NILPSPTTGT  120
FPALNFNWKN DSNTTQEDVK QEDKGYPDFS FQTNSVSMTL NYEDSKRKDG LSSEKTVSEF  180
NSLQQSLPPV TTSTQMSSQN YSEYNQCCPP SQTLREQRRS DDGYNWRKYG QKQVKGSENP  240
RSYYKCTHPN CPTKKKVERA LDGQITEIVY KGAHNHPKPQ STRRSSSSTA SSASTLAAQS  300
YNAPASEVPD QSYWSNGNGQ MDSVATPENS SISIGDDEFE QSSQKRESGG GDEFDEDEPD  360
AKRWKVENES EGVSAPGSRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY  420
YKCTSQGCPV RKHVERASHD IRSVITTYEG KHNHDVPAAR GSGGHALNRG ANPNNNAAMA  480
MAIRPSTMSL QSNYPIPIPS TRPIPGEGQA PYEMLQGPGS FGYSGFGNPM NGYANQIQDN  540
AFSRAKEEPR DDLFLETLLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-115	WRKY family protein