PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019178373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23561.8 Da PI: 8.083 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+k+l +++ +er da+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+a+l XP_019178373.1 7 PCGACKFLRRKCAADCIFAPYFCSDQgPARFAAIHKVFGASNVSKMLMQVSVHERCDAVVTIDYEARARIKDPVYGCVAHIFALQQQVVSLQAQL 101 7*************************99******************************************************************* PP DUF260 95 allkeel 101 ++k++l XP_019178373.1 102 MQVKAQL 108 *999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MAAAGSPCGA CKFLRRKCAA DCIFAPYFCS DQGPARFAAI HKVFGASNVS KMLMQVSVHE 60 RCDAVVTIDY EARARIKDPV YGCVAHIFAL QQQVVSLQAQ LMQVKAQLAQ TLMTSNTSAA 120 GNHQSWPSYT AAGGGAGGFP ASVNSAGSPQ SSMDSLEGYY SEGVGLVKQE MAAAMLQNCR 180 DNEDYCCYYG GNNNINGSRK RVSQTDLGEL QALALRMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-56 | LBD family protein |