PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178359.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 742aa MW: 83937 Da PI: 7.6092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	6.1e-21	57	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019178359.1 57 VYNSYAYTLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 141 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS 60 YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD 120 VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRFL 180 KHQSGGSPLV GFTSRDAYNS MAADTVKRLD GTDSNSLIEI FRRRQSTETD FFFDFELDLD 240 ARLCSFFWRD GQMRRDYEVF GDLLVHDTTY RTNKYDMICA PFVGMNHHCM NVMFGCGFLM 300 NERIESFVWL FKVFSRSMGG KSPQTIMTDQ CAAMTAAISK HIKTLRSNKD FLDMFNYVLK 360 YTETEAEFQF YWTRLVTDYK CHKNTWLEKL YDCREKWCPA FNKDYFSGGI LSSQRSETTN 420 HSISRRLSKT AGLCDFYSSF VSVISEWRSK ENGEDFRCAQ GVPAMMMEHV KLLSHAREVY 480 TIEIYFLFEE QFMKGSACHQ EMVLNDGRQQ KYHVWRPDID IIRHEVSFNA ANLDISCSCK 540 LMSELGILCC HCIRILHVHC VSSIPDKYIL KRWTKKVIDG RNVNIDSMVY NVGVPPSIWV 600 FDISRKFQRL VVSSQDSSVA RKLCDEAVDD VKKKVEAEVG HVHIEECGVS SSSGGVQNPS 660 SRRLKGERNK RRSGVIEKKY SLARGRRSVA NKAALSTKGA VQSLVLENIS KLAGDGYLVH 720 PSSSSSDFVQ FSKGLDDNVG VD

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS  60
YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD  120
VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRFL  180
KHQSGGSPLV GFTSRDAYNS MAADTVKRLD GTDSNSLIEI FRRRQSTETD FFFDFELDLD  240
ARLCSFFWRD GQMRRDYEVF GDLLVHDTTY RTNKYDMICA PFVGMNHHCM NVMFGCGFLM  300
NERIESFVWL FKVFSRSMGG KSPQTIMTDQ CAAMTAAISK HIKTLRSNKD FLDMFNYVLK  360
YTETEAEFQF YWTRLVTDYK CHKNTWLEKL YDCREKWCPA FNKDYFSGGI LSSQRSETTN  420
HSISRRLSKT AGLCDFYSSF VSVISEWRSK ENGEDFRCAQ GVPAMMMEHV KLLSHAREVY  480
TIEIYFLFEE QFMKGSACHQ EMVLNDGRQQ KYHVWRPDID IIRHEVSFNA ANLDISCSCK  540
LMSELGILCC HCIRILHVHC VSSIPDKYIL KRWTKKVIDG RNVNIDSMVY NVGVPPSIWV  600
FDISRKFQRL VVSSQDSSVA RKLCDEAVDD VKKKVEAEVG HVHIEECGVS SSSGGVQNPS  660
SRRLKGERNK RRSGVIEKKY SLARGRRSVA NKAALSTKGA VQSLVLENIS KLAGDGYLVH  720
PSSSSSDFVQ FSKGLDDNVG VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-70	FAR1 family protein