PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178331.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 484aa MW: 52686.1 Da PI: 8.2388

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.9e-18	136	182	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+++v+++G ++W+ Ia ++ gR +kqc++rw+++l XP_019178331.1 136 KGQWTEEEDRLLIRLVNEHGDRRWSVIATKIV-GRAGKQCRERWHNHL 182 799***************************.***********97 PP
2	Myb_DNA-binding	51	3.4e-16	188	230	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++ ++ llv++++qlG++ W+ Ia++++ gR+++++k++w+ XP_019178331.1 188 KESWSERDERLLVQVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 230 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MDGSGGGGGY RSFSVNFPNP ILPPFPPVIV HRRYNHQEIL PFPERFGSSS FHGSASSTNS 60 LLPAADAATA SWLSHLQNVN FGGSRGSFPH GLVAPPPASW GNQNPEMMSA AGSPEETRRE 120 KGHDERRSSN GVAFIKGQWT EEEDRLLIRL VNEHGDRRWS VIATKIVGRA GKQCRERWHN 180 HLRPDIKKES WSERDERLLV QVHEQLGNRW SEIAKRIPGR SENSIKNHWN ATKRRQFSKR 240 RMRSSSLQDA GSSRAGGRRR SVVLENYIKF KYFSGLSLGQ PGSSLVPEQP SIQQQVNVDI 300 PPPQPLPPAA AAAAAAAGDE QDSRDSPSIL TETYDDEVNF MQKLFGNSSS SSTSPTAANN 360 GSRSNNTAEF AAFGWRTNEV DSVPEEDSWS TYLASDPNLY EMGGADQINS STPQAPAANN 420 TNSGAGYGSA AASHCGAPPL NRWSSSATAA AMDMDLMDLV SAASSSRCPH GYGSCCTKTP 480 RQMF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MDGSGGGGGY RSFSVNFPNP ILPPFPPVIV HRRYNHQEIL PFPERFGSSS FHGSASSTNS  60
LLPAADAATA SWLSHLQNVN FGGSRGSFPH GLVAPPPASW GNQNPEMMSA AGSPEETRRE  120
KGHDERRSSN GVAFIKGQWT EEEDRLLIRL VNEHGDRRWS VIATKIVGRA GKQCRERWHN  180
HLRPDIKKES WSERDERLLV QVHEQLGNRW SEIAKRIPGR SENSIKNHWN ATKRRQFSKR  240
RMRSSSLQDA GSSRAGGRRR SVVLENYIKF KYFSGLSLGQ PGSSLVPEQP SIQQQVNVDI  300
PPPQPLPPAA AAAAAAAGDE QDSRDSPSIL TETYDDEVNF MQKLFGNSSS SSTSPTAANN  360
GSRSNNTAEF AAFGWRTNEV DSVPEEDSWS TYLASDPNLY EMGGADQINS STPQAPAANN  420
TNSGAGYGSA AASHCGAPPL NRWSSSATAA AMDMDLMDLV SAASSSRCPH GYGSCCTKTP  480
RQMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	8e-55	MYB family protein