PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178239.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 324aa    MW: 35545.4 Da    PI: 8.131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19212245134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_019178239.1 212 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 245
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MGMVEQAAYW DGIAGGGDDY DYDNVMDMLN VLDFPPECLE GDGDGDALID DFDFDASKLG  60
PIPSDALTGF LPVPQANIMQ NNFSNAALKL KPSVDCVSQR TQNKYSDAQE AVMFQTQSPV  120
SVLESSASCS GGKAIPVKTG VAVPVRTRTK RTRPSTNPWL LASLISSSTA FESRKTSAAK  180
RRRERKLVQK SIVAVKDARN TNDALDAVVK KCTHCEVTKT PQWREGPMGP KTLCNACGVR  240
YRSGRLFPEY RPAASPTFTP SLHSNSHRKV VEMRRKAVQG EAIVEESCKK VAEMSKKAFQ  300
ESFTPPMSPL PEFVPMSNYL FDCI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RTRTKR
2174187RKTSAAKRRRERKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.28e-44GATA family protein