PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178156.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91924 Da    PI: 6.4689
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-182582457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019178156.1 25 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                    5789****************************************************97 PP
2START150.71.3e-471623692204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka  ++  W +++ +++g++++ +f+ s+++s  a+ra+g+v  ++++  e+l d++  W +++++ e+      g  g+++l+
  XP_019178156.1 162 IAEETLAEFLSKAMGTAIDWIQMPGMKPGPDSVGIFAISHSCSRVAARACGLVSLEPTKIIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELI 255
                     7899******************************************************8888888888.***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+    s++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_019178156.1 256 YTQIYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNasaASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLY 350
                     *****************************************999999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_019178156.1 351 ESSKVIAQKMTIAALRYIR 369
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MAMVVHQHRE SSSGSIHKHL DAGKYVRYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLSAMN KLLMEENDRL QKQVSQLVCE  120
NGFMRQQLRT APTTTDASCE SAVTTPHHSL RDASNPAGLL SIAEETLAEF LSKAMGTAID  180
WIQMPGMKPG PDSVGIFAIS HSCSRVAARA CGLVSLEPTK IIEILKDRPS WFRDCRSLEV  240
FTMFPAGNGG TIELIYTQIY APTTLAPARD FWTLRYTTTL ENGSLVVCER SLSGTGAGPN  300
ASAASQFVRA EMLPSGYLIR PCEGGGSIIH IVDHLNLEAW SVPEVLRPLY ESSKVIAQKM  360
TIAALRYIRQ IAQETSGEVV YSLGRQPAVL RTFSQRLNRG FNDAINGFND DGWSVLSGDG  420
AEDVTVAINS TKNLGTTSNT LPLLGGILCA KASMLLQNVP PAVLVRFLRE HRSEWADFNV  480
DAYSATALKT NSCAYPGMRP TRFTGSQIIM PLGHTIEHEE MLEVIRLEGH SLGHENAFIS  540
GDIHLLQMCR GIDESAVGAC AELVFAPIDE MFPDDAPLLP SGFRIIPLDS ISNDAQDTLN  600
AQRTLDLTSS LEVGPATNTA QNASSSCAAR SLLTIAFQFP YEDNLQENVA TMARQYVRSV  660
ISSVQRVAMA ISPTGFGPTL GPKVSPGSPE ALTLAQWINQ SYSYHMGAQL LGTDSVGAES  720
VLKNLWHHHD AILCCSIKSL PVFIFANKAG LDMLETTLLA LQDITLDKIF DESGRKALFA  780
ELAKIMQQGF AYLPGGLCMS AMGRHISYEQ AIAWKVLADD ESTVHCLAFS FINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein