PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178155.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 267aa    MW: 29796.8 Da    PI: 9.6844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.4e-13557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w++++
   XP_019178155.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllHSRSNIDLKDKWRNLK 57
                     79***********************************9*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LHSRSNIDLK DKWRNLKASA  60
NAQGSRDKSK SQKPKPKANA DVPMTPVPNA LTHASSTPFL RDTSTPEDGK TASKYNGMIY  120
EALTNLKDPS GCDIGTIVNF IEQRHEVPPN SRRLLSSRLR RLVQQDKLEK IHNCFRIKKE  180
FLRASSTTPT PKIKDLQNSG YLGDTVEEVA IAAAYMIAEA ENKSFVAAEA VKEAERVSRM  240
TEDSDVLLQL AKDIYDKCAR GEIVLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-48MYB_related family protein