PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178034.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 801aa MW: 91032.7 Da PI: 7.2592

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	104	189	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA ++GFs rk k+++ + ++ +++ f+Csk+g+r ++ ++ ++ +tr gC+a+ + +++gkw+vtk ++eHnHel+ XP_019178034.1 104 YNDYAFRMGFSARKGKKYYVTGTRILKTKVFCCSKSGFRIIPDNP--NKCYSKIVTRSGCNAMCQFDIDSNGKWVVTKHVKEHNHELC 189 9******************99999************99988..88999********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MNEIVVTNRI EEIDSNSMIV DENSSVFAGK DDIPVAGECI SPIAFDVPCT NFVDDNEYIP 60 DDFDNSIVVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSARKGKK 120 YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH 180 VKEHNHELCL ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGIRFLKC QSGGSLFVGF 240 TPRDAYNMIS SDSAKHLDGT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ 300 MKADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVWLFK 360 VFVRSMGGKH PQTIMIDQCA AMAAGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL 420 ELFNFLLKYT DTEAEFEFYW TRMMIEYGCY KNVWLNKLYS IREKWCPAFS KEYFSGGILS 480 SQRSESTNHS ISRRLSKTAG LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL 540 LSHARDIYTI EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND 600 LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL 660 SIASSVWVIQ MGRKFQQLVL SSQVNCKARE VCENAFEDAR RKVEGDIGPI VIEDGEERIA 720 GVIQNPARNR TKGERNRRHI STIEKKYNQV RGRKLGVKVA EMSTKAAVQA SVEGVVANIV 780 GSGYFVHPSS GSHELGLVKS S

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MNEIVVTNRI EEIDSNSMIV DENSSVFAGK DDIPVAGECI SPIAFDVPCT NFVDDNEYIP  60
DDFDNSIVVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSARKGKK  120
YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH  180
VKEHNHELCL ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGIRFLKC QSGGSLFVGF  240
TPRDAYNMIS SDSAKHLDGT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ  300
MKADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVWLFK  360
VFVRSMGGKH PQTIMIDQCA AMAAGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL  420
ELFNFLLKYT DTEAEFEFYW TRMMIEYGCY KNVWLNKLYS IREKWCPAFS KEYFSGGILS  480
SQRSESTNHS ISRRLSKTAG LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL  540
LSHARDIYTI EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND  600
LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL  660
SIASSVWVIQ MGRKFQQLVL SSQVNCKARE VCENAFEDAR RKVEGDIGPI VIEDGEERIA  720
GVIQNPARNR TKGERNRRHI STIEKKYNQV RGRKLGVKVA EMSTKAAVQA SVEGVVANIV  780
GSGYFVHPSS GSHELGLVKS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	728	738	RNRTKGERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-88	FAR1 family protein