PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177686.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 650aa MW: 71477.3 Da PI: 6.0155

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.4	7.8e-29	206	259	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_019177686.1 206 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 259 79*****************.******************************8 PP
2	Myb_DNA-binding	42.6	1.4e-13	208	258	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qky+ XP_019177686.1 208 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 258 678***********************************************7 PP
3	Response_reg	81.1	3.6e-27	26	134	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ +y ev+++ +e al ll+e++ +D++l D+ mp+mdG++ll+ i e +lp+i+++a ++++ + + + G XP_019177686.1 26 VLVVDDDPTCLRILEKMLRTCHY-EVTTCNMAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEYIGLEM-DLPVIMMSADDSKNVVMKGVTHG 118 89*******************.***********999999******************6654.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_019177686.1 119 AYDYLIKPVRIEALKN 134 **********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MSVHSSTASW KSVDAVSDQF PAGLRVLVVD DDPTCLRILE KMLRTCHYEV TTCNMAEVAL 60 SLLRENKNGF DIVLSDVHMP DMDGFKLLEY IGLEMDLPVI MMSADDSKNV VMKGVTHGAY 120 DYLIKPVRIE ALKNIWQHVV RKRKHEWKDK DIEQSGSVED GDRQQKPSED VDYSSSANEG 180 NWKSSKKRKD EEDEGEERDE TSALKKPRVV WSVELHQQFV AAVNQLGIDK AVPKKILELM 240 NVPGLTRENV ASHLQKYRLY LRRLSGVSQH QSGLNSSFMG PPDPPFGTMS SLNGLDFQTL 300 AATGQISAQS LASLQAAALG RSATKPAISM PLVDQRNLFS FENPKFRYVE GQQQLNNNNK 360 RIGLLHGIPT TMEPKQLTNL QNQSSQAFGS RGMQPHQGHQ NNSLLIQAQM LNEPNGSQVS 420 RVTQPILSNG MSSELLARNG IVDNSRGAIY QPVSQADFSV NHNTEMQNNS FVSGNSGMSS 480 CLASKRMMIP EEVNSDVKRP RGGGGFAPPS YDIFNDLQQH KAQDDWGVGA VFEASRLPNA 540 QGSLDASPSV MVQQGFSSNG RVSIGKAVFP SGQESGNPMV GPQLNSLLGG NSITIKAERL 600 PDTSYQNTLF PVDQHGQDDL MSALLKQQES VGAVENEFSF DGYQLGNLPV

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MSVHSSTASW KSVDAVSDQF PAGLRVLVVD DDPTCLRILE KMLRTCHYEV TTCNMAEVAL  60
SLLRENKNGF DIVLSDVHMP DMDGFKLLEY IGLEMDLPVI MMSADDSKNV VMKGVTHGAY  120
DYLIKPVRIE ALKNIWQHVV RKRKHEWKDK DIEQSGSVED GDRQQKPSED VDYSSSANEG  180
NWKSSKKRKD EEDEGEERDE TSALKKPRVV WSVELHQQFV AAVNQLGIDK AVPKKILELM  240
NVPGLTRENV ASHLQKYRLY LRRLSGVSQH QSGLNSSFMG PPDPPFGTMS SLNGLDFQTL  300
AATGQISAQS LASLQAAALG RSATKPAISM PLVDQRNLFS FENPKFRYVE GQQQLNNNNK  360
RIGLLHGIPT TMEPKQLTNL QNQSSQAFGS RGMQPHQGHQ NNSLLIQAQM LNEPNGSQVS  420
RVTQPILSNG MSSELLARNG IVDNSRGAIY QPVSQADFSV NHNTEMQNNS FVSGNSGMSS  480
CLASKRMMIP EEVNSDVKRP RGGGGFAPPS YDIFNDLQQH KAQDDWGVGA VFEASRLPNA  540
QGSLDASPSV MVQQGFSSNG RVSIGKAVFP SGQESGNPMV GPQLNSLLGG NSITIKAERL  600
PDTSYQNTLF PVDQHGQDDL MSALLKQQES VGAVENEFSF DGYQLGNLPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-177	ARR-B family protein