PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177575.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 738aa MW: 82097.6 Da PI: 8.3916

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.2e-21	142	226	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019177575.1 142 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 226 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MQQAVKLVLV FCTICLLVSE GWAKGGGGGG GRGGGGGFKG GSSGGRRGGG VTNGDVRDGG 60 VGGGNGRTVG SGVRPLPVVP HGNHQSNNSQ STIVTWLFSE GIVDGSVSSD QVDVDVDGSS 120 SIPVDQDLVG LVVSNADEAF EVYNSYAYRL GFSVRKGHQR YKGSSNTIQM KKFCCSKAGY 180 KANSGVKAYS KIDTRTGCGA FVQFDVGDDG LWTVTKHEKV HNHELCVFNK SHLLRSHRSV 240 GDNQLLYLQG LKDSGVALAD GIRFLKHQSG GSPLVGFTSR DAYNSMAADT VKRLDGTDSN 300 SLIEIFRRRQ STETDFFFDF ELDLDARLCI FFWRDGQMRR DYEVFGDLLV HDTTYRTNKY 360 DMICAPFVGM NHHCMNVMFG CGFLMNERIE SFVWLFKVFS RSMGGKSPQT IMTDQCAAMA 420 AAISKVFPTS RHRLCIWHIG ENSKKHIKTL RSNKDFLDMF NYVLKYTETE AEFQFYWTRL 480 VTDYKCHKNT WLEKLYDCRE KWCPAFNKDY FSGGILSSQR SETTNHSISR RLSKTAGLCD 540 FYSSFVSVIS EWRSKENGED FRCAQGVPAM MMEHVKLLSH AREVYTIEIY FLFEEQFMKG 600 SACHQEMVLN DGRQQKYHVW RPDIDIIRHE VEAEVGHVHI EECGVSSSSG GVQNPSSRRL 660 KGERNKRRSG VIEKKYSLAR GRRSAANKAA LSTKGAVQSL VLENISKLAG DGYLVHPSSS 720 SSDFVQFSKG LDDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MQQAVKLVLV FCTICLLVSE GWAKGGGGGG GRGGGGGFKG GSSGGRRGGG VTNGDVRDGG  60
VGGGNGRTVG SGVRPLPVVP HGNHQSNNSQ STIVTWLFSE GIVDGSVSSD QVDVDVDGSS  120
SIPVDQDLVG LVVSNADEAF EVYNSYAYRL GFSVRKGHQR YKGSSNTIQM KKFCCSKAGY  180
KANSGVKAYS KIDTRTGCGA FVQFDVGDDG LWTVTKHEKV HNHELCVFNK SHLLRSHRSV  240
GDNQLLYLQG LKDSGVALAD GIRFLKHQSG GSPLVGFTSR DAYNSMAADT VKRLDGTDSN  300
SLIEIFRRRQ STETDFFFDF ELDLDARLCI FFWRDGQMRR DYEVFGDLLV HDTTYRTNKY  360
DMICAPFVGM NHHCMNVMFG CGFLMNERIE SFVWLFKVFS RSMGGKSPQT IMTDQCAAMA  420
AAISKVFPTS RHRLCIWHIG ENSKKHIKTL RSNKDFLDMF NYVLKYTETE AEFQFYWTRL  480
VTDYKCHKNT WLEKLYDCRE KWCPAFNKDY FSGGILSSQR SETTNHSISR RLSKTAGLCD  540
FYSSFVSVIS EWRSKENGED FRCAQGVPAM MMEHVKLLSH AREVYTIEIY FLFEEQFMKG  600
SACHQEMVLN DGRQQKYHVW RPDIDIIRHE VEAEVGHVHI EECGVSSSSG GVQNPSSRRL  660
KGERNKRRSG VIEKKYSLAR GRRSAANKAA LSTKGAVQSL VLENISKLAG DGYLVHPSSS  720
SSDFVQFSKG LDDNVGVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	32	KGGGGGGGR
2	28	37	GGGGRGGGGG
3	29	38	GGGGRGGGGG
4	30	39	GGGGRGGGGG
5	44	53	GGGGRGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-68	FAR1 family protein