PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177491.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 480aa MW: 54300.4 Da PI: 6.3217

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.4	9.5e-29	44	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+l+L+++r+em+ ++r++ lk+plW+evs+km+e g++rs+k+C+ek+en+ k+++++keg+++r ++ +++++f+qle XP_019177491.1 44 RWPHEETLTLLKIRSEMDLAFRDSTLKGPLWDEVSRKMEEFGYQRSAKKCREKFENIYKYHRRTKEGRSGR--QTGKNYRFFEQLE 127 8******************************************************************97..56668****97 PP
2	trihelix	97.6	1.1e-30	319	403	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e+ aLi++r++++ + ++ +k+plWe++s+ m++ g+ r++k+Ckekwen+nk+y+++k+++k+r +e+s+tcpyf+ l+ XP_019177491.1 319 RWPKPEIEALIQIRTNLDLQHHDNGSKGPLWEDISAEMKKLGYDRNAKRCKEKWENINKYYRRVKDSNKRR-PEDSKTCPYFHILD 403 8******************************************************************97.99*******887 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MLETAVLLDN PGGGGGAAAV AEPQNDGGGG EEEGGNQNSG GGNRWPHEET LTLLKIRSEM 60 DLAFRDSTLK GPLWDEVSRK MEEFGYQRSA KKCREKFENI YKYHRRTKEG RSGRQTGKNY 120 RFFEQLEVFD AMQSHNKIGG AAAAEPPELA SPSPVAMIKP NTNIVQDFRM RPHGFGADAD 180 VLSASTSTTY SSGGSSGRKR KLAGYFEKMM KEVLEKQEDL QKKFLEAIER CENERMAREE 240 AWKKQEIERL KREQESLAKE RAIAEAKDAA VIAFLQKISK QPILVPHKPQ SEDVQEFAAQ 300 TKENGSGDTT ISSSSSSSRW PKPEIEALIQ IRTNLDLQHH DNGSKGPLWE DISAEMKKLG 360 YDRNAKRCKE KWENINKYYR RVKDSNKRRP EDSKTCPYFH ILDSLYQTKS RKVELSPTPD 420 LPNFNLKAGE MLLQIMTQNQ HQQPGKEDGE RSNAHQTQEH DEDSEESEDD EFQIVANQAS

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MLETAVLLDN PGGGGGAAAV AEPQNDGGGG EEEGGNQNSG GGNRWPHEET LTLLKIRSEM  60
DLAFRDSTLK GPLWDEVSRK MEEFGYQRSA KKCREKFENI YKYHRRTKEG RSGRQTGKNY  120
RFFEQLEVFD AMQSHNKIGG AAAAEPPELA SPSPVAMIKP NTNIVQDFRM RPHGFGADAD  180
VLSASTSTTY SSGGSSGRKR KLAGYFEKMM KEVLEKQEDL QKKFLEAIER CENERMAREE  240
AWKKQEIERL KREQESLAKE RAIAEAKDAA VIAFLQKISK QPILVPHKPQ SEDVQEFAAQ  300
TKENGSGDTT ISSSSSSSRW PKPEIEALIQ IRTNLDLQHH DNGSKGPLWE DISAEMKKLG  360
YDRNAKRCKE KWENINKYYR RVKDSNKRRP EDSKTCPYFH ILDSLYQTKS RKVELSPTPD  420
LPNFNLKAGE MLLQIMTQNQ HQQPGKEDGE RSNAHQTQEH DEDSEESEDD EFQIVANQAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-61	Trihelix family protein