PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177389.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 784aa MW: 89296.1 Da PI: 6.5117

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.3	2.6e-28	70	167	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 fYn YA++vGFs+r+s s++s+r+g i++r fvC k+g+r ++ k + +r+r+etr+gCka+l vk ++ +gkw+v+ + eHnHe XP_019177389.1 70 FYNGYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKQGFRVDKAKPtschddgGGRVKRPRVETRVGCKAMLLVKIQEeSGKWVVAGFIREHNHE 164 9**************************************999999999998889999*************999************** PP FAR1 89 lap 91 l+p XP_019177389.1 165 LVP 167 *86 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MEFEPMSMGN DVIEFDMIGI VDGAIDIEHP MDDDDDDDNR GGGSRGAGGD MNLEPYEGME 60 FESEEAAKAF YNGYARRVGF STRVSMSRRS RRDGAIIQRS FVCAKQGFRV DKAKPTSCHD 120 DGGGRVKRPR VETRVGCKAM LLVKIQEESG KWVVAGFIRE HNHELVPPDK VHCLRSHRHV 180 SGAAKALIDT LQGAGIGASG IMSALIKEYG GINNIGFTER DCRNYMKSSK QRTLGGDPKI 240 LLDYLKQKHA ENPAFFYAVQ GDEDQCMSNV FWADLNARNS YTYFGDTVTF DTTYRSNRYR 300 LPFAMFTGVN HHRQPVLFGC AFLPNESEAS FVWLFKTWLT AMSGKGKPPV SITTDHDRLI 360 RLAVTQVFPE TRHRFCMWHI FKECQEKLSD VLSKHPNFEA EFYKCVSVTE SIEEFESCWL 420 SLIDRYDLRE NEWLKTIFAD RGQWVPVYLR NTFFAEMSMT QHSDSLNSYF DGYINASTTL 480 QQFVKQYEKA LESRYEKEVK ADYDSINTAP VLKTPSPMEK QASEVYTRKL FAKFQGELVE 540 TLGFFATKVE DQELITTYQV SKFGESHKSY LVRYNVGDMK ASCSCQMFEF CGLLCRHILT 600 VFRITNLLTL PSQYILKRWT KNAKSSVVLD EGTNNLLNSC RESLTQRYNN LQNEALRYVD 660 ESAGDEEICN VALDALREAA NKVAIAKRNS DKLSIVNGPG DIQECTILLS HANTRSQDHQ 720 LDPGKPLPLD EQDRKIQSLS WQLEHAEQKC EAYRASLLSI LKDIEQQKLQ LVVKVQNIKF 780 GLKD

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MEFEPMSMGN DVIEFDMIGI VDGAIDIEHP MDDDDDDDNR GGGSRGAGGD MNLEPYEGME  60
FESEEAAKAF YNGYARRVGF STRVSMSRRS RRDGAIIQRS FVCAKQGFRV DKAKPTSCHD  120
DGGGRVKRPR VETRVGCKAM LLVKIQEESG KWVVAGFIRE HNHELVPPDK VHCLRSHRHV  180
SGAAKALIDT LQGAGIGASG IMSALIKEYG GINNIGFTER DCRNYMKSSK QRTLGGDPKI  240
LLDYLKQKHA ENPAFFYAVQ GDEDQCMSNV FWADLNARNS YTYFGDTVTF DTTYRSNRYR  300
LPFAMFTGVN HHRQPVLFGC AFLPNESEAS FVWLFKTWLT AMSGKGKPPV SITTDHDRLI  360
RLAVTQVFPE TRHRFCMWHI FKECQEKLSD VLSKHPNFEA EFYKCVSVTE SIEEFESCWL  420
SLIDRYDLRE NEWLKTIFAD RGQWVPVYLR NTFFAEMSMT QHSDSLNSYF DGYINASTTL  480
QQFVKQYEKA LESRYEKEVK ADYDSINTAP VLKTPSPMEK QASEVYTRKL FAKFQGELVE  540
TLGFFATKVE DQELITTYQV SKFGESHKSY LVRYNVGDMK ASCSCQMFEF CGLLCRHILT  600
VFRITNLLTL PSQYILKRWT KNAKSSVVLD EGTNNLLNSC RESLTQRYNN LQNEALRYVD  660
ESAGDEEICN VALDALREAA NKVAIAKRNS DKLSIVNGPG DIQECTILLS HANTRSQDHQ  720
LDPGKPLPLD EQDRKIQSLS WQLEHAEQKC EAYRASLLSI LKDIEQQKLQ LVVKVQNIKF  780
GLKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein