PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177324.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 1054aa MW: 119871 Da PI: 6.3878

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.7	8.3e-57	21	137	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL+n++k++++ e++++p++gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqr XP_019177324.1 21 LEAQHRWLRPAEICEILKNYQKFQIAPEPPNTPPNGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQR 115 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leee+++ivlvhy+evk XP_019177324.1 116 RSYWMLEEEMSHIVLVHYREVK 137 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence
MATESRRYGL NAQLDIDQIL LEAQHRWLRP AEICEILKNY QKFQIAPEPP NTPPNGSLFL 60 FDRKVLRYFR KDGHKWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEEN ENFQRRSYWM 120 LEEEMSHIVL VHYREVKGNR VNFNHVKESQ IAIPGYQESE DTTSLNSAVA SEYEDAESVY 180 IQQKNPVAHS FLEVQSTMMQ KAQDELSVSL YPVPLANDHQ GQFSAISGIN FPSIVQGNQN 240 RNTANIYVPC QGHGFTSWKN IEETSTARYQ PALSSMNSDT ISAMHGQEDT TIGFTNNLGN 300 NQKLMNCVYA LEEWQTSEGD SLQSSEWSVD KKLNPDQACD FSTKLNEEKL MEFCDFPTKH 360 KHPMQNDLQV QLNNADGGNF AKTKLDSDLN MRINIDHSAL KQPLLNGFLR QELKKLDSFD 420 RWINKELEDV NEPHMQTSSG NYWDNVGNED GVDESTIASQ VQRDTYVLSP SLSQEQFFSI 480 TEFSPNWAYA GTEIKILITG RFLKSQQEVD QCNWACMFGE LEVPAEVISD GVLRCLTPIQ 540 KVGRVPFYVT CSNRLACSEV REFEFRVNEI ENGNSGSYKE SLLNMRFGNL LSLESVSFEN 600 SVPGNMDYVS HLTSKINSLL KEDNSEWEHM FPHTSEDQLH QKFLKEKLRF WLLQKVVVGG 660 KGPNVLDESG QGVLHFAAAL DYDWAIPPTL VAGVNVNFRD VNGWTALHWA AFCGRERMVV 720 FLIALGAAPG ALTDPTPQHP SGRTPADLAS SNGHKGIAGY LAEASLSTHL SSLELKENKE 780 DKNGDASGVK AIHVVSERAA TPVNDGDWPY GLSLKDSLAA VRNATQAAAR IHQVFRVQSF 840 QRKQIKEYGD GEVGLSDERA LSLLAVRKNR AGQNNEPLHV AAMRIQNKFR SWKGRKDFLL 900 IRQQIIKIQA HVRGHQVRKN YRKITWSVGI LEKVILRWRR KGSGLRGFKS EALAEGHSMQ 960 DQPKQEDDYD FLKEGRKQTE ERLQTALARV QSMVQYPEAR DQYRRLLNVV SEMQETKNKY 1020 DRVLKRSGRT YEFDEDLIEL EAFLNDDTFM PTAS

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence

MATESRRYGL NAQLDIDQIL LEAQHRWLRP AEICEILKNY QKFQIAPEPP NTPPNGSLFL  60
FDRKVLRYFR KDGHKWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEEN ENFQRRSYWM  120
LEEEMSHIVL VHYREVKGNR VNFNHVKESQ IAIPGYQESE DTTSLNSAVA SEYEDAESVY  180
IQQKNPVAHS FLEVQSTMMQ KAQDELSVSL YPVPLANDHQ GQFSAISGIN FPSIVQGNQN  240
RNTANIYVPC QGHGFTSWKN IEETSTARYQ PALSSMNSDT ISAMHGQEDT TIGFTNNLGN  300
NQKLMNCVYA LEEWQTSEGD SLQSSEWSVD KKLNPDQACD FSTKLNEEKL MEFCDFPTKH  360
KHPMQNDLQV QLNNADGGNF AKTKLDSDLN MRINIDHSAL KQPLLNGFLR QELKKLDSFD  420
RWINKELEDV NEPHMQTSSG NYWDNVGNED GVDESTIASQ VQRDTYVLSP SLSQEQFFSI  480
TEFSPNWAYA GTEIKILITG RFLKSQQEVD QCNWACMFGE LEVPAEVISD GVLRCLTPIQ  540
KVGRVPFYVT CSNRLACSEV REFEFRVNEI ENGNSGSYKE SLLNMRFGNL LSLESVSFEN  600
SVPGNMDYVS HLTSKINSLL KEDNSEWEHM FPHTSEDQLH QKFLKEKLRF WLLQKVVVGG  660
KGPNVLDESG QGVLHFAAAL DYDWAIPPTL VAGVNVNFRD VNGWTALHWA AFCGRERMVV  720
FLIALGAAPG ALTDPTPQHP SGRTPADLAS SNGHKGIAGY LAEASLSTHL SSLELKENKE  780
DKNGDASGVK AIHVVSERAA TPVNDGDWPY GLSLKDSLAA VRNATQAAAR IHQVFRVQSF  840
QRKQIKEYGD GEVGLSDERA LSLLAVRKNR AGQNNEPLHV AAMRIQNKFR SWKGRKDFLL  900
IRQQIIKIQA HVRGHQVRKN YRKITWSVGI LEKVILRWRR KGSGLRGFKS EALAEGHSMQ  960
DQPKQEDDYD FLKEGRKQTE ERLQTALARV QSMVQYPEAR DQYRRLLNVV SEMQETKNKY  1020
DRVLKRSGRT YEFDEDLIEL EAFLNDDTFM PTAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein