PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177203.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 354aa MW: 37558.3 Da PI: 7.5867

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.5	3.5e-68	121	284	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.............aeaaskrkrelkskkqs 84 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerq+qlaa+++++++++ +e ++kr+re+ s+++s XP_019177203.1 121 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQSQLAALQQHQENANnnqqslqlrssssRELTPKRHREDPSANNS 215 5789*************************************************9998877666678888888766555566777776555555 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l++ ++++++ le+ ++P++vs +a f+cvr++svddg++++aYq+av+igGhvfkGiLyd+G+e+ XP_019177203.1 216 SLARLP-TTGTPPAGLEVGNFPAKVSLTAAFQCVRMRSVDDGDDQYAYQAAVNIGGHVFKGILYDEGPES 284 555555.56788999***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MAGFFSLGGG GGRGGATTNT QDHHRESSSQ PNEINPESWF LYRNDQEMAP AGYKGFELWQ 60 DQPAAAHQIR HHQINPLQDL YSSAVGLGVG PSRTAAAAGI DEHSRSAAFV TMMRSGVGST 120 GGGISCQDCG NQAKKDCSHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QSQLAALQQH 180 QENANNNQQS LQLRSSSSRE LTPKRHREDP SANNSSLARL PTTGTPPAGL EVGNFPAKVS 240 LTAAFQCVRM RSVDDGDDQY AYQAAVNIGG HVFKGILYDE GPESQYLTAG ESSSGGGSAA 300 AEHNLLPSTA ATSTAAAAPA SDHQGSGYVD PSSIYPAPLS TFMAGTFFPP PARS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MAGFFSLGGG GGRGGATTNT QDHHRESSSQ PNEINPESWF LYRNDQEMAP AGYKGFELWQ  60
DQPAAAHQIR HHQINPLQDL YSSAVGLGVG PSRTAAAAGI DEHSRSAAFV TMMRSGVGST  120
GGGISCQDCG NQAKKDCSHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QSQLAALQQH  180
QENANNNQQS LQLRSSSSRE LTPKRHREDP SANNSSLARL PTTGTPPAGL EVGNFPAKVS  240
LTAAFQCVRM RSVDDGDDQY AYQAAVNIGG HVFKGILYDE GPESQYLTAG ESSSGGGSAA  300
AEHNLLPSTA ATSTAAAAPA SDHQGSGYVD PSSIYPAPLS TFMAGTFFPP PARS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-71	SRS family protein