PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177031.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 601aa MW: 69715.6 Da PI: 6.9504

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.7	9.4e-14	24	75	34	90
FAR1 34 vCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Cs+ g+++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH+++ XP_019177031.1 24 CCSNAGFKKKSGAN-----HPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHNHPVN 75 8*****999888.....9********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MEAVSLNSKP VFEDGDEYED EGECCSNAGF KKKSGANHPR PETRTGCPAM IVIKLVDSKR 60 WRIVEVELQH NHPVNPEIKR FYKSHKKMIL AAKQMGQSKP VTEVHTIKLY RTDVIDAPGD 120 SYPEVNERDA GNPVNLSKHL ELKDGDSHAV YNYFCRMKLT NPNFFYLMDL DDEGHLRNVF 180 WADARSRAAY NYFSDIIAID TTSLTNKYEI PLISFIGVNH HGQSVLLGCG FLGHESVEHF 240 VWMFKSWLTS MLGRHPQVII TDQSKPLQTA VSEVFPQARH CYCLSYIMRR VPEKLGGLKG 300 YELIKRQLNK AVYSSLKIVE FESFWREMIV QHGLNDNKWL QLLYEDRHKW VPVYLKDVFS 360 VGMIPIKENE SLGAFFDGYV HKHTTFKEFV DRYDLALQRK HLQEAMADHE SRNPVFELKT 420 KCNFELQLSK VYTKDVFKNF QTEVEGMFSC FHTRQVSVNG PIMTFVVKER VEAEGGVKEV 480 RQYEVLYETT RMEVRCICSL FNFKGYLCRH ALNVLNYNGV EEIPSQYILP RWHRDFKRKF 540 PGDFGLSDID LDDPAKLYTS LYGRALQVVE EGTQSQEHYQ AVLQELETLL NKFSVVQDNL 600 V

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MEAVSLNSKP VFEDGDEYED EGECCSNAGF KKKSGANHPR PETRTGCPAM IVIKLVDSKR  60
WRIVEVELQH NHPVNPEIKR FYKSHKKMIL AAKQMGQSKP VTEVHTIKLY RTDVIDAPGD  120
SYPEVNERDA GNPVNLSKHL ELKDGDSHAV YNYFCRMKLT NPNFFYLMDL DDEGHLRNVF  180
WADARSRAAY NYFSDIIAID TTSLTNKYEI PLISFIGVNH HGQSVLLGCG FLGHESVEHF  240
VWMFKSWLTS MLGRHPQVII TDQSKPLQTA VSEVFPQARH CYCLSYIMRR VPEKLGGLKG  300
YELIKRQLNK AVYSSLKIVE FESFWREMIV QHGLNDNKWL QLLYEDRHKW VPVYLKDVFS  360
VGMIPIKENE SLGAFFDGYV HKHTTFKEFV DRYDLALQRK HLQEAMADHE SRNPVFELKT  420
KCNFELQLSK VYTKDVFKNF QTEVEGMFSC FHTRQVSVNG PIMTFVVKER VEAEGGVKEV  480
RQYEVLYETT RMEVRCICSL FNFKGYLCRH ALNVLNYNGV EEIPSQYILP RWHRDFKRKF  540
PGDFGLSDID LDDPAKLYTS LYGRALQVVE EGTQSQEHYQ AVLQELETLL NKFSVVQDNL  600
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein