PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176888.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 360aa MW: 40974.9 Da PI: 9.4987

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.4e-20	11	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ + r+++ t ++ C++eg+++++ ++ ++ +r+r+++rtgC+a++ k + ++v+++ + XP_019176888.1 11 EFYNNYAAKVGFDTRSSSLDRA-RDRTKTLKQIICNREGFKNTDAQHchsksnadagegPSRPKRRRVSNRTGCRARIIFKYIGVAGYQVATFIE 104 6***************9998.66668999********999999***999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019176888.1 105 KHNHSMS 111 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MIFKTLDAGI EFYNNYAAKV GFDTRSSSLD RARDRTKTLK QIICNREGFK NTDAQHCHSK 60 SNADAGEGPS RPKRRRVSNR TGCRARIIFK YIGVAGYQVA TFIEKHNHSM SSVLAMQFLK 120 GIRNISSVHH KFILDCAKAN IGASKSHGLY SQIVGDYSEV GVTVVDFKNV RRDLRAYILG 180 ADAQIPVHNL IKKHEMCLAF AFNYDVDEDE QMSRLFWADP MSKKNFAAFG DVVSFNATYS 240 TNRYDLVFTP FTGVDNHKKC ITFGAGLLLK EDIESYVWLF ENFKKAMGME TRIIVTDQDP 300 AMKVAIPRVF KQARHRYCIW HIMCKDGETV GPTLNKNEDF KNKLNSIVWT SSLEPPDFEK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MIFKTLDAGI EFYNNYAAKV GFDTRSSSLD RARDRTKTLK QIICNREGFK NTDAQHCHSK  60
SNADAGEGPS RPKRRRVSNR TGCRARIIFK YIGVAGYQVA TFIEKHNHSM SSVLAMQFLK  120
GIRNISSVHH KFILDCAKAN IGASKSHGLY SQIVGDYSEV GVTVVDFKNV RRDLRAYILG  180
ADAQIPVHNL IKKHEMCLAF AFNYDVDEDE QMSRLFWADP MSKKNFAAFG DVVSFNATYS  240
TNRYDLVFTP FTGVDNHKKC ITFGAGLLLK EDIESYVWLF ENFKKAMGME TRIIVTDQDP  300
AMKVAIPRVF KQARHRYCIW HIMCKDGETV GPTLNKNEDF KNKLNSIVWT SSLEPPDFEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-53	FAR1 family protein