PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176784.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 355aa MW: 38686 Da PI: 6.3894

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.5e-06	11	43	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC + +lC C +++H XP_019176784.1 11 KLCDSCKAVSATVFCGADTAFLCLACDSKIHAA 43 68****99*******************54 PP
2	zf-B_box	28.4	3.3e-09	53	97	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++++ C+ + lC +C +H H++ p XP_019176784.1 53 VWVCEVCEQAPASFTCKADAAALCVTCDRDIHAAnplarrHERLP 97 689*****************************6577888888776 PP
3	CCT	70	6e-24	292	336	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e XP_019176784.1 292 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 336 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGAESWSLTA KLCDSCKAVS ATVFCGADTA FLCLACDSKI HAANKLASRH ARVWVCEVCE 60 QAPASFTCKA DAAALCVTCD RDIHAANPLA RRHERLPVVP FYDSAAAAAK SHGAGDDSKY 120 FSNESDNQNP EEAEEEAEAA SWLLPTPNNA KGVDLEGSEY KSADYLFNDM DPYLDMEMIP 180 GGGGDQKPHH HHHHQHYNSD GVVPVQKKTE TRHVPGSVVD GFPTYEIDFA AGSKPPFMYN 240 FASQSISQSV SSSSMEVGVV PDHNAMADVS NAPFSRTSGG DAVPNPVSGL DREARVLRYR 300 EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRSETEVD SLLAADASYG VVPSY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGAESWSLTA KLCDSCKAVS ATVFCGADTA FLCLACDSKI HAANKLASRH ARVWVCEVCE  60
QAPASFTCKA DAAALCVTCD RDIHAANPLA RRHERLPVVP FYDSAAAAAK SHGAGDDSKY  120
FSNESDNQNP EEAEEEAEAA SWLLPTPNNA KGVDLEGSEY KSADYLFNDM DPYLDMEMIP  180
GGGGDQKPHH HHHHQHYNSD GVVPVQKKTE TRHVPGSVVD GFPTYEIDFA AGSKPPFMYN  240
FASQSISQSV SSSSMEVGVV PDHNAMADVS NAPFSRTSGG DAVPNPVSGL DREARVLRYR  300
EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRSETEVD SLLAADASYG VVPSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	3e-92	CO-like family protein