PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019176771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 40955.1 Da PI: 8.7017 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.7 | 2.4e-06 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F r nL+ H r+H XP_019176771.1 70 YVCEFCGQGFQREQNLQMHRRRH 92 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.2e-05 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_019176771.1 150 WVCDKCSKGYAVQSDYKAHLKTC 172 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence |
MLDNNVNATN EATPGPSSSS EAALTSPAPA PQNGVSVSIP KRKRRPAGTP DPDAEVVSLS 60 PKTLLESDRY VCEFCGQGFQ REQNLQMHRR RHKVPWKASK RGAAAAGAGK KRVYVCPEAS 120 CLHHDARHAL GDLVGIKKHY RRKHSNSKQW VCDKCSKGYA VQSDYKAHLK TCGTRGHSCD 180 CGRVFSRVES FIEHQDACAA KRNNGTDTQP SATSPSSDAN FSTAVPPPLT IPPPAEPPSD 240 EHYHKKHYSG LELQLLPSSP AFPPPEDDGA GLNLSIGSCS AGQKSGAVAS EEMKMAMAEK 300 SYAEETRQDA RRQTELAELE FASAKRIRLA AKAELEKAQV LKEQAAEKIS AIMLEITCRA 360 CKQKLSENGD FRPRLDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | PKRKRRP |
2 | 41 | 46 | KRKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-119 | C2H2 family protein |