PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176733.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 611aa MW: 69969.9 Da PI: 8.8015

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.5e-20	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++YA++vGF++r s+ + r+++ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ k + ++vt++ + XP_019176733.1 64 EFYKHYASKVGFDTRSSSVVTA-RDETKIQKQIVCNREGFKNTGAQHfhsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIE 157 6*************999888.6667999*********99999****999899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019176733.1 158 KHNHSMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MEEFDRVPID IQSTNNPSLS LSSSSNGHTL TISPGMTQYW TPHCEDEIKP AVDMIFKTLD 60 AGIEFYKHYA SKVGFDTRSS SVVTARDETK IQKQIVCNRE GFKNTGAQHF HSQSSADAGE 120 GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS 180 VHQKFILDCA KANIGASKSH GLYSQIVRNY SEVGATVVDF KNVRRDLRAY ILGDDAQILL 240 MKMSRLFWAD PMSKKNFAAF GDVVSFDATY STNRYDLAMG MEPRIIVTDQ DPAMKVAIPT 300 VFKQARHRYC MWHIMCKVGE KKQWRELMEK YNLVEHNWFT TMFEARKHWI PAYFRDSFMG 360 GLLRITSRSE SENYTYNRFT GPQSSLVEFM MNFDSALKSQ RNTNAKLNSD NEGYNPDMKT 420 PLGIEKHASI VYTITVFYQV QEEICASCFK CMVLSVREDG GMLHYDIMDG KNKRFTVVHN 480 VNDHEAKCSC KMFEMVGLLC RHIFVVFRDL ERIPLEYVVN RWTKDASLKA TFEIDGVIYD 540 HNGPKDEKKM LLNKVWSDIH CCMDLAGSNI EQLTAFSQVI NEQKQLLLSG KEKLSPQHSR 600 RTVIESYCGS T

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MEEFDRVPID IQSTNNPSLS LSSSSNGHTL TISPGMTQYW TPHCEDEIKP AVDMIFKTLD  60
AGIEFYKHYA SKVGFDTRSS SVVTARDETK IQKQIVCNRE GFKNTGAQHF HSQSSADAGE  120
GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS  180
VHQKFILDCA KANIGASKSH GLYSQIVRNY SEVGATVVDF KNVRRDLRAY ILGDDAQILL  240
MKMSRLFWAD PMSKKNFAAF GDVVSFDATY STNRYDLAMG MEPRIIVTDQ DPAMKVAIPT  300
VFKQARHRYC MWHIMCKVGE KKQWRELMEK YNLVEHNWFT TMFEARKHWI PAYFRDSFMG  360
GLLRITSRSE SENYTYNRFT GPQSSLVEFM MNFDSALKSQ RNTNAKLNSD NEGYNPDMKT  420
PLGIEKHASI VYTITVFYQV QEEICASCFK CMVLSVREDG GMLHYDIMDG KNKRFTVVHN  480
VNDHEAKCSC KMFEMVGLLC RHIFVVFRDL ERIPLEYVVN RWTKDASLKA TFEIDGVIYD  540
HNGPKDEKKM LLNKVWSDIH CCMDLAGSNI EQLTAFSQVI NEQKQLLLSG KEKLSPQHSR  600
RTVIESYCGS T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-72	FAR1 family protein