PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176470.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 762aa MW: 86385.9 Da PI: 7.7997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.6	6.3e-21	57	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019176470.1 57 VYNSYAYTLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 141 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS 60 YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD 120 VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRFL 180 KHQSGGSPLV GFTSRDAYNS MAADTVKRLD GTDSNSLIEI FRRRQSTETD FFFDFELDLD 240 ARLCSFFWRD GQMRRDYEVF GDLLVHDTTY RTNKYDMICA PFVGMNHHCM NVMFGCGFLM 300 NERIESFVWL FKVFSRSMGG KSPQTIMTDQ CAAMAAAISK VFPTSRHRLC IWHIGENSKK 360 HIKTLRSNKD FLDMFNYVLK YTETEAEFQF YWTRLVTDYK CHKNTWLEKL YDCREKWCPA 420 FNKDYFSGDI LSSQRSETTN HSISRRLSKT AGLCDFYSSF VSVISEWRSK ENGEDFRCAQ 480 GVPAMMMEHV KLLSHAREVY TIEIYFLFEE QFMKGSACHQ EMVLNDGRQQ KYHVWRPDID 540 IIRHEVSFNT ANLDISCSCK LMSELGILCC HCIRILHVHC VSSIPDKYIL KRWTKKVIDG 600 RNVNIDSMVY NVGVPPSIWV FDISRKFQRL VVSSQDSSVV RKLCDEAVDD VKKKVEAEVG 660 HVHIEECGVS SSSGGVQNPS SRRLKGERNK RRSGVIEKKY SLARGRRSAA NKAALSTKGA 720 VQSLVLENIS KLAGDGYLVH PSSSSSDFVQ FSKGLDDNVG VD

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS  60
YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD  120
VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRFL  180
KHQSGGSPLV GFTSRDAYNS MAADTVKRLD GTDSNSLIEI FRRRQSTETD FFFDFELDLD  240
ARLCSFFWRD GQMRRDYEVF GDLLVHDTTY RTNKYDMICA PFVGMNHHCM NVMFGCGFLM  300
NERIESFVWL FKVFSRSMGG KSPQTIMTDQ CAAMAAAISK VFPTSRHRLC IWHIGENSKK  360
HIKTLRSNKD FLDMFNYVLK YTETEAEFQF YWTRLVTDYK CHKNTWLEKL YDCREKWCPA  420
FNKDYFSGDI LSSQRSETTN HSISRRLSKT AGLCDFYSSF VSVISEWRSK ENGEDFRCAQ  480
GVPAMMMEHV KLLSHAREVY TIEIYFLFEE QFMKGSACHQ EMVLNDGRQQ KYHVWRPDID  540
IIRHEVSFNT ANLDISCSCK LMSELGILCC HCIRILHVHC VSSIPDKYIL KRWTKKVIDG  600
RNVNIDSMVY NVGVPPSIWV FDISRKFQRL VVSSQDSSVV RKLCDEAVDD VKKKVEAEVG  660
HVHIEECGVS SSSGGVQNPS SRRLKGERNK RRSGVIEKKY SLARGRRSAA NKAALSTKGA  720
VQSLVLENIS KLAGDGYLVH PSSSSSDFVQ FSKGLDDNVG VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-82	FAR1 family protein