PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176447.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 276aa    MW: 30747 Da    PI: 4.9391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96.3e-2264148290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA+++GFsvrk +++++  +++i +++f+Csk g+++++  k      ++  trtgC a ++    +dg w vtk e+ HnHel+
  XP_019176447.1  64 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 148
                     7********************99999***************99877....8999*********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDQVDVDVDG SSSIPVDQDL VGLVVSNADE  60
AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC  120
GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLRSHR SVGDNQLLYL QGLKDSGVAL  180
ADGIRFLKHQ SGGSPLVGFT SRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF  240
DFELDLDARD ESPLHECNVW MRVFDEREDR IVCVVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1 family protein