PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176444.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 775aa MW: 86087.8 Da PI: 7.8832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	123	212	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF+ r+++ +k r+g ++++ vC+++g++++ ++ t+ +rr+r+++r+gCkak+++k++++g ++v+ +e+ H+H+++ XP_019176444.1 123 FYKQYAGTVGFDCRQQSIRKD-RDGVAVEKHVVCNRQGFKQRVSRVakTTLARRRRVTNRVGCKAKVVIKRKSNGLYVVHYFEERHTHSMC 212 9***********9998887.9999*********9987766558899***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MWCAADVLQS GGVCGEGSGG VCDNSTDVCG KGSGGVCDEG NPTDVGIECN GDGCDDGNVT 60 GVGVAGSGVG CDEDYLADVG VQGSVCVLET SPGLTKYWRP VCADSVKPIV GQQFVSLDGA 120 VVFYKQYAGT VGFDCRQQSI RKDRDGVAVE KHVVCNRQGF KQRVSRVAKT TLARRRRVTN 180 RVGCKAKVVI KRKSNGLYVV HYFEERHTHS MCSIIARQFL KVNRSLDAGH QMFIASCVRA 240 NIGSVRSYRL FKEIVGEYSS AFDFEYDVDE GDQLSRVFWA DAVSRKNFAL FGDVVSFDAT 300 YRTNRYKLVF VPFTGIDNHK RSITFGAGLL TREDVDSYVW LLEKFKKTMC HDPICVVTDQ 360 DPALKVAVAR VFGTSKHRFC MWHIMCKVGE KVGPILSKDE VFRRKLNGIV WNKSLDSKSF 420 EEAWSCIMEE YGLGDNGWFR YLFESRTYWA SPYFHDEFMS GLVRTTSRSE SQNSFFGTFS 480 NGHSSLVEFL VHFGSAVGAQ RHAQAKLNAD CESCFPVLKT PLALEKHAMD VYTISVFYDV 540 QVEICAACYS CQVVSLCDCD GHVSYGIKDG AQRAWYVELV LSDYTATCSC KMFERTGLLC 600 RHIFFVFKDR GLESIPSRYV VSRWTKGACL KPIFHIDDTI VDQSSKVENV RIFTNLLWSD 660 IYVCVGLADG NIERLSQLRR VICEQRQLFL QEGSEDGSGV VAGGSKQSVI NSFCGDVSQG 720 STVEVRDPIQ AKNKGSGKRL KSTREKAASK CVKQSRKCHT CDEYGHNSRT CPLNG

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MWCAADVLQS GGVCGEGSGG VCDNSTDVCG KGSGGVCDEG NPTDVGIECN GDGCDDGNVT  60
GVGVAGSGVG CDEDYLADVG VQGSVCVLET SPGLTKYWRP VCADSVKPIV GQQFVSLDGA  120
VVFYKQYAGT VGFDCRQQSI RKDRDGVAVE KHVVCNRQGF KQRVSRVAKT TLARRRRVTN  180
RVGCKAKVVI KRKSNGLYVV HYFEERHTHS MCSIIARQFL KVNRSLDAGH QMFIASCVRA  240
NIGSVRSYRL FKEIVGEYSS AFDFEYDVDE GDQLSRVFWA DAVSRKNFAL FGDVVSFDAT  300
YRTNRYKLVF VPFTGIDNHK RSITFGAGLL TREDVDSYVW LLEKFKKTMC HDPICVVTDQ  360
DPALKVAVAR VFGTSKHRFC MWHIMCKVGE KVGPILSKDE VFRRKLNGIV WNKSLDSKSF  420
EEAWSCIMEE YGLGDNGWFR YLFESRTYWA SPYFHDEFMS GLVRTTSRSE SQNSFFGTFS  480
NGHSSLVEFL VHFGSAVGAQ RHAQAKLNAD CESCFPVLKT PLALEKHAMD VYTISVFYDV  540
QVEICAACYS CQVVSLCDCD GHVSYGIKDG AQRAWYVELV LSDYTATCSC KMFERTGLLC  600
RHIFFVFKDR GLESIPSRYV VSRWTKGACL KPIFHIDDTI VDQSSKVENV RIFTNLLWSD  660
IYVCVGLADG NIERLSQLRR VICEQRQLFL QEGSEDGSGV VAGGSKQSVI NSFCGDVSQG  720
STVEVRDPIQ AKNKGSGKRL KSTREKAASK CVKQSRKCHT CDEYGHNSRT CPLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-88	FAR1 family protein