PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176431.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 513aa MW: 57374.2 Da PI: 6.3245

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	9e-13	328	376	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r ++ Er+RR++i+++++ Lr l+P+ +K++ a+iL A++Y+++Lq XP_019176431.1 328 RSKNLVTERNRRNKIKDGLFALRALVPNI-----TKMDRASILADAIDYVRELQ 376 5666778*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MSRGNQGGHY CYTKCRGFWE AVFIVNAIGG VDEPIMGASE TALHWLRPLV ESKNWDYCVI 60 WRLGDDPSRF IEWVGCCCCG AYGVLCNVKK EKGVEQDLGP LCRDVHVQHH VRTMACEALA 120 SFPTSIPLYS GIRGEVVILK EPKWLIHGYA SDSKAPDGTS GTQVLIPVAG GLIELYSSRL 180 IPKDQKTIEF VKNRFKFYVE EAMNDMAYFS MSRQQQALDL SLHCADLLAT AQLSQVSEPC 240 SNPSIHGSST GSTPASTERL QCDSVSNLVS LSESFNQSND LFKEKMKLHC NQHPTTMKID 300 DLSLSCVTYD IARNAVVTGQ KRQRGQYRSK NLVTERNRRN KIKDGLFALR ALVPNITKMD 360 RASILADAID YVRELQQIVK ELEDELNEID EDDASQRIAQ HVTPDLNEER KDSEQTSKKS 420 QSSCSISNNV PKKAHVEVNQ IDARVFMLRF IGKHSRGGFS RLMEIMDSLG LQVLDANVTT 480 LNEEVLSIFR AEAKADGMCN SQTLEYALIE LTN

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MSRGNQGGHY CYTKCRGFWE AVFIVNAIGG VDEPIMGASE TALHWLRPLV ESKNWDYCVI  60
WRLGDDPSRF IEWVGCCCCG AYGVLCNVKK EKGVEQDLGP LCRDVHVQHH VRTMACEALA  120
SFPTSIPLYS GIRGEVVILK EPKWLIHGYA SDSKAPDGTS GTQVLIPVAG GLIELYSSRL  180
IPKDQKTIEF VKNRFKFYVE EAMNDMAYFS MSRQQQALDL SLHCADLLAT AQLSQVSEPC  240
SNPSIHGSST GSTPASTERL QCDSVSNLVS LSESFNQSND LFKEKMKLHC NQHPTTMKID  300
DLSLSCVTYD IARNAVVTGQ KRQRGQYRSK NLVTERNRRN KIKDGLFALR ALVPNITKMD  360
RASILADAID YVRELQQIVK ELEDELNEID EDDASQRIAQ HVTPDLNEER KDSEQTSKKS  420
QSSCSISNNV PKKAHVEVNQ IDARVFMLRF IGKHSRGGFS RLMEIMDSLG LQVLDANVTT  480
LNEEVLSIFR AEAKADGMCN SQTLEYALIE LTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	5e-61	bHLH family protein