PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176007.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 729aa    MW: 79888.7 Da    PI: 5.7533
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-1959114156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+  qVk+WFqN+R+++k
  XP_019176007.1  59 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 114
                     688999***********************************************998 PP
2START218.22.7e-682494691206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+Wv s+    e++++de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++ qW+  +a    +a tl
  XP_019176007.1 249 ELAVAAMEELIRMAQSGEPLWVPSPdnstEILIEDEYVRTFPRGIGpkplgFKSEASRESAVVIMNHINLVEILMDVN-QWSAVFAgivsRALTL 342
                     57899**************************************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R+ +f+Ry++q+ +g+w++vdvS+d  ++      v R++++pSg+li++++ng+skvtw+ehv
  XP_019176007.1 343 EVLSTGvagnynGALQTMTAEFQVPSPLVPtRENYFLRYCKQHCDGTWAVVDVSLDTLRPSA----VTRCRRRPSGCLIQELPNGYSKVTWIEHV 433
                     *********************************************************99965....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+++r+lv+sgla+gak+wv +l+rqce+
  XP_019176007.1 434 EVDDRAVHSIYRPLVNSGLAFGAKRWVMALDRQCER 469
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MFQPNMFDTH HHLLDMGHKP PENELDMLRD DEFESKSGTD IMEAPSGDDQ DPNLPSNKKK  60
RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLSLEPL QVKFWFQNKR TQMKAQHERH  120
ENSQLRAEND KLRADNIRYK EALSNASCPN CGGPATIGEM SFDEQHLRIE NVRLREEIDK  180
ISAIAAKYVG KPMLSFPNAP PLAPPRSLDL GVGSFGPPSA QLPGELYTAG DLLRSVSGPS  240
DADKPMIIEL AVAAMEELIR MAQSGEPLWV PSPDNSTEIL IEDEYVRTFP RGIGPKPLGF  300
KSEASRESAV VIMNHINLVE ILMDVNQWSA VFAGIVSRAL TLEVLSTGVA GNYNGALQTM  360
TAEFQVPSPL VPTRENYFLR YCKQHCDGTW AVVDVSLDTL RPSAVTRCRR RPSGCLIQEL  420
PNGYSKVTWI EHVEVDDRAV HSIYRPLVNS GLAFGAKRWV MALDRQCERL ASAMASNIQT  480
GEVGVITSPE GRKSMLKLAE RMVMSFCAGV GASTAHTWTT LSGSGADDVR VMTRKSIDDP  540
GRPPGIVLSA ATSFWLPVPP KRVFDFLRDE NSRNEWDILS NGGLVQEMAH IANGRDPGNC  600
VSLLRVNSAN SSQSNMLILQ ESCTDSTGSY VIYAPVDIVA MNVVLSGGDP DYVALLPSGF  660
AILPDGPSSN GAVNPEVGSG GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI  720
KSAVACESA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein