PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175907.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92828.3 Da    PI: 6.278
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-192179357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019175907.1 21 KYVRYTPEQIEALERLYHECPKPSSLRRQQLIRECsilsNIEPKQIKVWFQNRRCREKQ 79
                    5679*****************************************************97 PP
2START178.34.6e-561663742205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++l++ s+g  g+++l 
  XP_019175907.1 166 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCVGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNAMSTGngGTVELL 259
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  +++g++vi+++S++++q+ p+    +++vRae+ pSg+li+p+++g+s +++v+hvdl+ ++++++lr+l+
  XP_019175907.1 260 YMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVICERSLNNTQNGPSmppVQHFVRAEMMPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLY 354
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++   ++t++a+l+++++
  XP_019175907.1 355 ESSTLLSQRTTLAALRHLRQ 374
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MMMAVTSSCK ESGKMGLDNG KYVRYTPEQI EALERLYHEC PKPSSLRRQQ LIRECSILSN  60
IEPKQIKVWF QNRRCREKQR KESSRLQAVN RKLTAMNKLL MEENDRLQKQ VSHLVYENSY  120
FRQHTQNAAL TTTDNSCESV VTSGQNNLTP QRPPPRDASP AGLLSLAEET LTEFLSKATG  180
TAVEWVQMPG MKPGPDSIGI IAISHGCVGV ASRACGLVGL EPTRVAEILK DRPSWFRDCR  240
AVDVLNAMST GNGGTVELLY MQLYAPTTLA PARDFWLLRY TSVMEDGSLV ICERSLNNTQ  300
NGPSMPPVQH FVRAEMMPSG YLIRPCEGGG SIIHIVDHVD LEPWSVPEVL RPLYESSTLL  360
SQRTTLAALR HLRQISQEIS QPTVTGWGRR PAALRALSQR LSKGFNEAVN GFTDEGWSMI  420
ESDGIDDVTI MVNSSTAKLM GANLPYANGL PPMSGAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADSSI DAYSAAAVKA GPCSLPVART GNFGGQVILP LAQTIEHEEF MEVVRLENMG  540
HFREDMLTAG DIFLLQLCSG VDENAVGTCA ELISAPIDAS FADDAPLLPS GFRIIPLDSR  600
MDASSPNRTL DLASTLEVGT GGTRQTGDQS KQCSTSKSVM TIAFQFAFEI HLQESIAAMA  660
RQYVRSIISS VQRVALALSP SQLSPHAGLR PPPGTPEAHT LARWICQSYR FFLGMDLLKS  720
ASEGGESILK SLWHHSDALM CCSLKALPVF SFANEAGLDM LETTLVALQD ITLEKVFDDN  780
GRKTLFSELP QIMQQGFTCL QGGICLSSMG RPVSYERAVA WKVLNEEENP HSICFMFINW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein