PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175889.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 825aa MW: 93238.4 Da PI: 8.6506

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.2	1.1e-17	137	235	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA+ +GF+vr +++++ r+ge+++r +vC++eg + +k ++k+rr+r ++r++C+a++ +k ++g++e+t +++ H XP_019175889.1 137 DFYTNYARVCGFDVRLHTTERA-RDGETVMRYLVCNREGIKGGGISKpicvhadsggKRKQRRRRISHRVKCRARVCFRKVSSGEFEITVFVEGH 230 6*************999887.8899***********999999****9999******************************* PP FAR1 86 nHela 90 +H ++ XP_019175889.1 231 SHRMC 235 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence
MSILSQEIRG RPEAINPSFA EISPPHHREI ISTIRNSPSP WSSTSSQQLS TMGRNAMHAV 60 NHPPGVLGPT SPSSFPAFPP WTQAATGAHA SEADNDYVSH GVRELLAEQT TYWCPAVDSE 120 ITPVVGRRFS TLAEGIDFYT NYARVCGFDV RLHTTERARD GETVMRYLVC NREGIKGGGI 180 SKPICVHADS GGKRKQRRRR ISHRVKCRAR VCFRKVSSGE FEITVFVEGH SHRMCSDASK 240 LFMRVNRKLD VAHQAFAANC VRANVGSSKG FKLYREVTGS YANVGATDTE FHNFKRDLQV 300 YVDGKDGEMI IEKFKTKRAM CENFFFDYDL DEENRVARLF WADPIGRRNF SLFGDTVSFD 360 ATYGTNRYNL VFVPFTGVDH HKRCITFAAG LLTKEDVESY TWLLRGFRTA MSSVPSCVIT 420 DQDPAMKIAI AQVLPDCRHR FCMWHIMTKV NEKIGSDLVK DVQFRNRLNG IVWNETISVG 480 EFEEQWRLLM EKYNLTTHRW FTKLYTEREL WIPAYFTDLP MSGLLRTTSR SEAENSIYGK 540 CSRPHFSLVE FYMQYESILE TQRYKQSKLN AESEGYLPDF KTPLALERYL AQMFTIIIFY 600 ELQHEIEAGC FYCRVVGIRE EGEVITYDIR GEGTTTYTVQ HTPVGNHASC SCKLFERMGL 660 VCRHMFLVFR DAQIKSLPLD YVLPRWCKQV GGVVCCRQCS DVPSTDSGPS RIWNAMHTCA 720 ALVGSDTERQ SRLVQVLEDL KGEFMNAGPN IAHAKGNNAA IVALCGVAPP ASITIKPPVQ 780 AKNKGTGKRI KSQRELAVLS SAKKGRKCGV CGEYAHHNAR SCPYK

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence

MSILSQEIRG RPEAINPSFA EISPPHHREI ISTIRNSPSP WSSTSSQQLS TMGRNAMHAV  60
NHPPGVLGPT SPSSFPAFPP WTQAATGAHA SEADNDYVSH GVRELLAEQT TYWCPAVDSE  120
ITPVVGRRFS TLAEGIDFYT NYARVCGFDV RLHTTERARD GETVMRYLVC NREGIKGGGI  180
SKPICVHADS GGKRKQRRRR ISHRVKCRAR VCFRKVSSGE FEITVFVEGH SHRMCSDASK  240
LFMRVNRKLD VAHQAFAANC VRANVGSSKG FKLYREVTGS YANVGATDTE FHNFKRDLQV  300
YVDGKDGEMI IEKFKTKRAM CENFFFDYDL DEENRVARLF WADPIGRRNF SLFGDTVSFD  360
ATYGTNRYNL VFVPFTGVDH HKRCITFAAG LLTKEDVESY TWLLRGFRTA MSSVPSCVIT  420
DQDPAMKIAI AQVLPDCRHR FCMWHIMTKV NEKIGSDLVK DVQFRNRLNG IVWNETISVG  480
EFEEQWRLLM EKYNLTTHRW FTKLYTEREL WIPAYFTDLP MSGLLRTTSR SEAENSIYGK  540
CSRPHFSLVE FYMQYESILE TQRYKQSKLN AESEGYLPDF KTPLALERYL AQMFTIIIFY  600
ELQHEIEAGC FYCRVVGIRE EGEVITYDIR GEGTTTYTVQ HTPVGNHASC SCKLFERMGL  660
VCRHMFLVFR DAQIKSLPLD YVLPRWCKQV GGVVCCRQCS DVPSTDSGPS RIWNAMHTCA  720
ALVGSDTERQ SRLVQVLEDL KGEFMNAGPN IAHAKGNNAA IVALCGVAPP ASITIKPPVQ  780
AKNKGTGKRI KSQRELAVLS SAKKGRKCGV CGEYAHHNAR SCPYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-86	FAR1 family protein