PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175876.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 305aa    MW: 34682.6 Da    PI: 9.128
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.89.8e-151191170
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkk 70
                    +fY++YA++vGF++r s+  +  r+g+ ++++ vC++eg++++  ++             ++ +r+r+++rtgC+a+++ k 
  XP_019175876.1 11 EFYKHYASKVGFDTRSSSVVTA-RDGTKIQKQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIMFKY 91
                    6**************9998887.88889***************999999*******999899999*************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MIFKTLDTGI EFYKHYASKV GFDTRSSSVV TARDGTKIQK QIVCNREGFK NTGAQHCHSQ  60
SSADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGVHQK FILDCAKANI GASKSHGLYS  120
HIVGDYSEVG ATVVDFKNVR RDLRAYILGA DAQILVHNLI KKQEMCPAFA FDYEVDEDEQ  180
MSRLFWADPM SKKNFAAFGD VVSFDATYST NRYNVAMGME PRIIVTDQDP AMKVAIPTVF  240
KQARHRYCMW HIMCKVGEKV GPTLNKDEEF KNKLNSIVWT SSLEPPDFEK HWRELMEKYN  300
LVEHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-36FAR1 family protein