PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019175663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 829aa MW: 91018.6 Da PI: 4.4552 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.6e-07 | 322 | 342 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G+C G++C+F H+ XP_019175663.1 322 ICDFFAK-GWCIKGSSCRFLHV 342 6******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 829 aa Download sequence |
MSSAAAAVDP PHNTVDPASK SEQEMEDEEY EYEYEEIEEE IEEEIEVEEE EEVEEVEEEE 60 EEGEKEDVEE AGADSDQELA PSNGEDSGKG TAEAGIAEAA AKLFNEHDHK KQDLEEEVAR 120 KEGADNAEEL TKLNEEDHAE GNVEVEETAA AEIAEGLSQC NKEGHEKENR QVLEPARLEK 180 LLGSDSATPQ ESVAHPPLDA SVVRDSDNNN GTASPDDTNE GKKSTVDGNK THRGDVNISL 240 HEGGVMPEKA FGCEINAAML DVDPSSNGII GVQYSKDMAD QEAAQAVEDM EISPRSDVPQ 300 LRPRSLSPGA EFNDKNKRPA IICDFFAKGW CIKGSSCRFL HVRDNAANSS KEGSVDASKL 360 KGILAGEGLK YTTEISAKNM HSDLGLSRIE HEATLRLKSG IEEVPLDKNL SVSDTSLKDK 420 DIGREYLEHK PYLANYNHSS SMLKDYSQTF GNNSFGRGLP SENCRNVGYS SYFSHLEGIR 480 SKGSQFLHDD HPSNCPVERV PLYPSASWNA SPLGLQKPIE GGKELSASGS VSFKHKSPPF 540 TGSESTLISH LDLSAPTHHS SLYKPNLSFD NWEPSVPFQP SFLITQRMLS EASRYDPIRD 600 SIEQTIAQDK PSQFPFSGQG ASASGTHVCE NADPVATGNL GPEQSSNKHS VSSHSSHKDA 660 VPRNLSEKEK ELMDTAGAHQ ENIYYTSLKE KQLPKSADFG DTTEADKTHC SNDTVQKNGA 720 QYKMELKVES VKSGNDVDGL VHQDSRALKQ FESAVVEFIK ELLKPTWREG LLSRDAYKAI 780 VKKTKANFLS TMQPEQIPDN SDSVKEYLSF AQPKLEKLVL GYVDKYGRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-39 | C3H family protein |