PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175648.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 721aa MW: 82370.4 Da PI: 8.9973

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.4	3.2e-20	11	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++YA++vGF++r s+ + r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ k + ++vt++ + XP_019175648.1 11 EFYKHYASKVGFDTRSSSVVTA-RDGTKIQNQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIE 104 6************9998887.888899**********999999***999899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019175648.1 105 KHNHSMS 111 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MIFKTLDAGI EFYKHYASKV GFDTRSSSVV TARDGTKIQN QIVCNREGFK NTGAQHCHSQ 60 SSADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGYQVT TFIEKHNHSM SSVLARQFLK 120 GNRNISSVHQ KFILDCAKEN IGASKSHGLY SQIVGDYFEV GATVVDFKNV RRDLRAYILG 180 ADAQILVHNL IKKQEMCPAF SFDYEVDEDG QMSRLFWADP MSKKNFAAFG DVVSFDATYS 240 TNRYDLVFTP FTGVDNHKKC ITFGAGLLLK EDIESYVWLF ENFKKAMGME PKIIVTDQDP 300 AMKVVIPTVF KQARHRYCMW HIMCKVGEKV GPTLNKDEEF RNKLNSIVWT SSLGPPDFEK 360 QWRELMEKYN LVEYNWFTTM FEARKHWIPA YFRDSFMGGL LRTTSRSESE NYTYSRFTGP 420 QSSLVEFMMN FDSALKSQRN TNAKLNSDNE GYNPDMKTPL GIEKHASIVY TITVFYQVQE 480 EICASCFKCM LLSVREEGGM LHYDIMDGKN KRFTVVHNVN DHEAKCSCKM FEMVGLLCRH 540 IFVVFRDLER IPLKCVVNRW TKDASLKATF EIDGVIYDQN GPKDEKKMLL NKVRSDIHCC 600 MDLASSNMEQ LTAFSQVINE QKQLLLSGKE KFSPQHSKRT VIESYCGSTE ISEINILPPK 660 QATNKGNGKH IKSSKELAME NKRAGSAIFL VLEEITMTPG LAHLTPKIRT RKRNAFYSLD 720 T

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MIFKTLDAGI EFYKHYASKV GFDTRSSSVV TARDGTKIQN QIVCNREGFK NTGAQHCHSQ  60
SSADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGYQVT TFIEKHNHSM SSVLARQFLK  120
GNRNISSVHQ KFILDCAKEN IGASKSHGLY SQIVGDYFEV GATVVDFKNV RRDLRAYILG  180
ADAQILVHNL IKKQEMCPAF SFDYEVDEDG QMSRLFWADP MSKKNFAAFG DVVSFDATYS  240
TNRYDLVFTP FTGVDNHKKC ITFGAGLLLK EDIESYVWLF ENFKKAMGME PKIIVTDQDP  300
AMKVVIPTVF KQARHRYCMW HIMCKVGEKV GPTLNKDEEF RNKLNSIVWT SSLGPPDFEK  360
QWRELMEKYN LVEYNWFTTM FEARKHWIPA YFRDSFMGGL LRTTSRSESE NYTYSRFTGP  420
QSSLVEFMMN FDSALKSQRN TNAKLNSDNE GYNPDMKTPL GIEKHASIVY TITVFYQVQE  480
EICASCFKCM LLSVREEGGM LHYDIMDGKN KRFTVVHNVN DHEAKCSCKM FEMVGLLCRH  540
IFVVFRDLER IPLKCVVNRW TKDASLKATF EIDGVIYDQN GPKDEKKMLL NKVRSDIHCC  600
MDLASSNMEQ LTAFSQVINE QKQLLLSGKE KFSPQHSKRT VIESYCGSTE ISEINILPPK  660
QATNKGNGKH IKSSKELAME NKRAGSAIFL VLEEITMTPG LAHLTPKIRT RKRNAFYSLD  720
T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-98	FAR1 family protein