PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175518.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 458aa MW: 50680.3 Da PI: 6.4556

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	20.6	1e-06	51	97	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 k+r rWt+e H+rFvea++ G A ++i e+++ k t+ +++SH Qk+ XP_019175518.1 51 KQRERWTEEEHQRFVEALKLYGR---A-WRKIEEHVGTK--TVIQIRSHAQKF 97 79****************99853...3.47899998887..788999999998 PP
2	Myb_DNA-binding	53.1	7.4e-17	53	97	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++v+a k++G W++I +++g ++t q++s+ qk+ XP_019175518.1 53 RERWTEEEHQRFVEALKLYGRA-WRKIEEHVG-TKTVIQIRSHAQKF 97 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MVAEAMSDGN SGAVSSAVNS KVETMTTQAG VSSSLGSEYL PKVRKPYTIT KQRERWTEEE 60 HQRFVEALKL YGRAWRKIEE HVGTKTVIQI RSHAQKFFTK VVRDLGNDGD GPIEIPPPRP 120 KKKPLHPYPR KMVDSSKPEM EVLGQSERSP SKMYNGERDN QSPDSVLSAI GSDDMESPVA 180 ELQHTQLQRS PASCTSDADS PNLAPIENDN ECLTSNSSVE KKGSVASVGV TAKSSHPTDN 240 SSVKLDLLSR DTASSVKELS RDNPGSFRLF GQTVSVSIAV ADSSKQEPHN FKDAAREEND 300 NTTVEGLPNH VNSQFVYTMV PHSMIPPASW FPQFLPNNDS KPTTMPPWWS WHQDLMHQYF 360 SSCSHVAAQT TYPEEDFKHP RPLRERSSTD SSSGSASEVN SVLRNCDAIE SKGGTVKLEN 420 TQNRKGFVPY KKCLAERNEE SSAADIEEPE RKKLCVGL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MVAEAMSDGN SGAVSSAVNS KVETMTTQAG VSSSLGSEYL PKVRKPYTIT KQRERWTEEE  60
HQRFVEALKL YGRAWRKIEE HVGTKTVIQI RSHAQKFFTK VVRDLGNDGD GPIEIPPPRP  120
KKKPLHPYPR KMVDSSKPEM EVLGQSERSP SKMYNGERDN QSPDSVLSAI GSDDMESPVA  180
ELQHTQLQRS PASCTSDADS PNLAPIENDN ECLTSNSSVE KKGSVASVGV TAKSSHPTDN  240
SSVKLDLLSR DTASSVKELS RDNPGSFRLF GQTVSVSIAV ADSSKQEPHN FKDAAREEND  300
NTTVEGLPNH VNSQFVYTMV PHSMIPPASW FPQFLPNNDS KPTTMPPWWS WHQDLMHQYF  360
SSCSHVAAQT TYPEEDFKHP RPLRERSSTD SSSGSASEVN SVLRNCDAIE SKGGTVKLEN  420
TQNRKGFVPY KKCLAERNEE SSAADIEEPE RKKLCVGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-42	MYB_related family protein