PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175500.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 886aa MW: 98498.1 Da PI: 8.2941

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.8e-19	794	874	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e++++++ k +++lW+e+s+++ + g++rsp qCk+ w +l ++y++ k+ +k+ ++++pyf++++ XP_019175500.1 794 KWKPEEVKKLIKMRGELNSKFQVLKGRMALWQEISSNLLSDGISRSPGQCKSLWASLVQKYEESKKDRKS-----QEKWPYFKDMN 874 7**************************************************************99998.....478****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence
MKMAVTSFTS GVSLCPYKLW YQPLLRRRFI SCSVRTPSVK DIRGAKLPRK RNVKGEGAGK 60 SMEDAVQRKM EQFYEGSDGP PLRILPIGGL GEIGMNCMLV GYYDRYILID AGVMFPGYDE 120 LGVVKIIPDT TFIEKWSHKI EAVIITHGHE DHIGALPWVI PALDSDTPIF ASSFTLELIK 180 KRLKEFSIFV PSRLKVFKTR RRFTAGPFEV EPIRVTHSIP DCCGLVLRCD AGTILHTGDW 240 KIDESPLDGN VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAATG 300 RIIATQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLVKAED 360 IDSYAPKDLL IVTTGSQAEP RAALNLASYG SSHSLKLSKD DLILYSAKVI PGNETRVMKM 420 LNRISEIGST VIMGKNELLH TSGHAHREEL EEVLRIVKPQ HFLPIHGELL FLKEHELLGR 480 STGIRHSTVI KNGEMLGVSH LRNRRVLSNG FISLGKENLQ LMYSDGDKAF GTAAELCVDE 540 RMRIASDGII VISMEILRPQ PTDTLSEKAI KGKIRITTRC LWLDKGKLLD ALHKAAHAAL 600 SSCPVNCPLH HMERTVSEVL RKLVRKYSSK RPEVIAIATE NPVSVLADEI SGKLSGKSHV 660 GSGISVLRKA INGDQEKRWS NTIQAEEENN GPEHLMNIAY EEEKGTDIDI ETDTSDEETT 720 SSSLLQDCSN NDLPSDDFWK PFVTSSTIHP SEENGDGALL QEQLHDSSVK GNNKLFSDLS 780 KSKLKSSKSM TRNKWKPEEV KKLIKMRGEL NSKFQVLKGR MALWQEISSN LLSDGISRSP 840 GQCKSLWASL VQKYEESKKD RKSQEKWPYF KDMNSILSDL EAPTSK

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence

MKMAVTSFTS GVSLCPYKLW YQPLLRRRFI SCSVRTPSVK DIRGAKLPRK RNVKGEGAGK  60
SMEDAVQRKM EQFYEGSDGP PLRILPIGGL GEIGMNCMLV GYYDRYILID AGVMFPGYDE  120
LGVVKIIPDT TFIEKWSHKI EAVIITHGHE DHIGALPWVI PALDSDTPIF ASSFTLELIK  180
KRLKEFSIFV PSRLKVFKTR RRFTAGPFEV EPIRVTHSIP DCCGLVLRCD AGTILHTGDW  240
KIDESPLDGN VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAATG  300
RIIATQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLVKAED  360
IDSYAPKDLL IVTTGSQAEP RAALNLASYG SSHSLKLSKD DLILYSAKVI PGNETRVMKM  420
LNRISEIGST VIMGKNELLH TSGHAHREEL EEVLRIVKPQ HFLPIHGELL FLKEHELLGR  480
STGIRHSTVI KNGEMLGVSH LRNRRVLSNG FISLGKENLQ LMYSDGDKAF GTAAELCVDE  540
RMRIASDGII VISMEILRPQ PTDTLSEKAI KGKIRITTRC LWLDKGKLLD ALHKAAHAAL  600
SSCPVNCPLH HMERTVSEVL RKLVRKYSSK RPEVIAIATE NPVSVLADEI SGKLSGKSHV  660
GSGISVLRKA INGDQEKRWS NTIQAEEENN GPEHLMNIAY EEEKGTDIDI ETDTSDEETT  720
SSSLLQDCSN NDLPSDDFWK PFVTSSTIHP SEENGDGALL QEQLHDSSVK GNNKLFSDLS  780
KSKLKSSKSM TRNKWKPEEV KKLIKMRGEL NSKFQVLKGR MALWQEISSN LLSDGISRSP  840
GQCKSLWASL VQKYEESKKD RKSQEKWPYF KDMNSILSDL EAPTSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein