PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175424.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 355aa MW: 40318.8 Da PI: 8.3188

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++YA +vGF++r s+ + r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ k + +++t++ + XP_019175424.1 64 EFYKHYAAKVGFDTRSSSVVTA-RDGTKIQKQIVCNREGFKNTGAQHcpsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQITTFIE 157 6************9998887.88889***********99999*****99899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019175424.1 158 KHNHNMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MEEFDRVPID IQSTNNPSLS PCSSNNGHTL TISPGMTQYW TPHCEDEIKP AVDMIFKTWD 60 AGIEFYKHYA AKVGFDTRSS SVVTARDGTK IQKQIVCNRE GFKNTGAQHC PSQSSADAGE 120 GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QITTFIEKHN HNMSSVLARQ FLKGNRNISS 180 VHQKFILDCA KANIGASKSH GLYSNIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV 240 HNLIKKQEMC PAFAFDYEVD EDEQTAMGME PRIIVTDQDP AMKVAIPTVF KEARHRYCMW 300 HIRCKVGEKV VPTLNKDEEF RNKLNSIVWT SSLEPPDFEK QWRELMEKYN LVEHN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MEEFDRVPID IQSTNNPSLS PCSSNNGHTL TISPGMTQYW TPHCEDEIKP AVDMIFKTWD  60
AGIEFYKHYA AKVGFDTRSS SVVTARDGTK IQKQIVCNRE GFKNTGAQHC PSQSSADAGE  120
GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QITTFIEKHN HNMSSVLARQ FLKGNRNISS  180
VHQKFILDCA KANIGASKSH GLYSNIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV  240
HNLIKKQEMC PAFAFDYEVD EDEQTAMGME PRIIVTDQDP AMKVAIPTVF KEARHRYCMW  300
HIRCKVGEKV VPTLNKDEEF RNKLNSIVWT SSLEPPDFEK QWRELMEKYN LVEHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-19	FAR1 family protein