PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175376.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 442aa MW: 51073.9 Da PI: 6.6105

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.5	1.8e-23	120	215	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+q+v++Li+a+++++e+ ++ kk++W+ vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ ++d l XP_019175376.1 120 KWTDQMVRLLITAVSYIGEEAAAEHsgrrkcsnlHKKGKWKLVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPTLLDLL 214 7************777777654334445577799******************************************669999999888877 PP trihelix 86 e 86 + XP_019175376.1 215 D 215 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEGNLSAGNM MTGNGSYTNM DLQGSIRVHH HQPQQVGLHQ QHHSLPRQGS MVRPPIHESF 60 PLSIGGPQGC NKNISWSDYG RGEGVKSASD EEEPSFAEDA AEGYNDQNRG KKALMWQRVK 120 WTDQMVRLLI TAVSYIGEEA AAEHSGRRKC SNLHKKGKWK LVSKVMAERG HFVSPQQCED 180 KFNDLNKRYK RLNEILGRGT SCEVVENPTL LDLLDHISEK TKEEVRKILS SKHLHYEEMC 240 SYHNANRLHL PPDPDLQRSL RLALRSRDDH DDNDVRGHEQ DNNDEDDQDD ELDEHERDQC 300 EENHNFNVHH RMYVVPAGGS GKRAKPNVNL GNSLNSQDCS MTFSFQTQNA NGDAMQSLSD 360 GVRGSASQKK WLDHRTLQLE EHKLHIQVQM LELEKERLKW QRFNREKDHE LEMMRMENER 420 MKLENERMAM ELKWKKMLTD NS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEGNLSAGNM MTGNGSYTNM DLQGSIRVHH HQPQQVGLHQ QHHSLPRQGS MVRPPIHESF  60
PLSIGGPQGC NKNISWSDYG RGEGVKSASD EEEPSFAEDA AEGYNDQNRG KKALMWQRVK  120
WTDQMVRLLI TAVSYIGEEA AAEHSGRRKC SNLHKKGKWK LVSKVMAERG HFVSPQQCED  180
KFNDLNKRYK RLNEILGRGT SCEVVENPTL LDLLDHISEK TKEEVRKILS SKHLHYEEMC  240
SYHNANRLHL PPDPDLQRSL RLALRSRDDH DDNDVRGHEQ DNNDEDDQDD ELDEHERDQC  300
EENHNFNVHH RMYVVPAGGS GKRAKPNVNL GNSLNSQDCS MTFSFQTQNA NGDAMQSLSD  360
GVRGSASQKK WLDHRTLQLE EHKLHIQVQM LELEKERLKW QRFNREKDHE LEMMRMENER  420
MKLENERMAM ELKWKKMLTD NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-110	Trihelix family protein